miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31898 3' -62.1 NC_006938.1 + 803 0.66 0.430765
Target:  5'- gUGUUGCcaGCCGGuGUggccgccuccgugccCGAGGCCuCCAa -3'
miRNA:   3'- -ACAGCGc-CGGCCuCA---------------GCUCCGGuGGU- -5'
31898 3' -62.1 NC_006938.1 + 968 0.66 0.436231
Target:  5'- gUGUC-CaGCCGGAG-C-AGGCCACUg -3'
miRNA:   3'- -ACAGcGcCGGCCUCaGcUCCGGUGGu -5'
31898 3' -62.1 NC_006938.1 + 1052 0.69 0.2845
Target:  5'- gUGUCGCGGC--GAG-CGAGGUCGuCCGg -3'
miRNA:   3'- -ACAGCGCCGgcCUCaGCUCCGGU-GGU- -5'
31898 3' -62.1 NC_006938.1 + 9116 0.67 0.342834
Target:  5'- cUGUCGUugaaGuCCGGGGUCGucaGGGCCGCgAg -3'
miRNA:   3'- -ACAGCGc---C-GGCCUCAGC---UCCGGUGgU- -5'
31898 3' -62.1 NC_006938.1 + 13536 0.66 0.41817
Target:  5'- -cUCGCGuuCCaGAGgCGGGGCCACCc -3'
miRNA:   3'- acAGCGCc-GGcCUCaGCUCCGGUGGu -5'
31898 3' -62.1 NC_006938.1 + 13585 0.79 0.049038
Target:  5'- aG-CGCGGCCGGAGUCGAcaggaguggaGGUCACUAc -3'
miRNA:   3'- aCaGCGCCGGCCUCAGCU----------CCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 15653 0.7 0.246103
Target:  5'- aG-CGCGGUCGGcGUCGAGGUCGg-- -3'
miRNA:   3'- aCaGCGCCGGCCuCAGCUCCGGUggu -5'
31898 3' -62.1 NC_006938.1 + 15798 0.71 0.201701
Target:  5'- -cUC-CGGCCGGAGgaGAGGCCuCCAg -3'
miRNA:   3'- acAGcGCCGGCCUCagCUCCGGuGGU- -5'
31898 3' -62.1 NC_006938.1 + 17478 0.66 0.400572
Target:  5'- aUGUCGUuuccGGCCGugccGUCugccuGGGCCACCAg -3'
miRNA:   3'- -ACAGCG----CCGGCcu--CAGc----UCCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 18136 0.67 0.350705
Target:  5'- gUGUgGCGGUgGGAccCGAGGaCGCCAu -3'
miRNA:   3'- -ACAgCGCCGgCCUcaGCUCCgGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 21038 0.66 0.41817
Target:  5'- gGUCGgGGCgguggcgucgaUGGAGuUCGAGGgaaCCGCCu -3'
miRNA:   3'- aCAGCgCCG-----------GCCUC-AGCUCC---GGUGGu -5'
31898 3' -62.1 NC_006938.1 + 21120 0.66 0.41817
Target:  5'- cUGUCcgacUGGCUGGAGUCccgcgcGGGCCACgAg -3'
miRNA:   3'- -ACAGc---GCCGGCCUCAGc-----UCCGGUGgU- -5'
31898 3' -62.1 NC_006938.1 + 24004 0.67 0.375078
Target:  5'- aGUCGaCGGCCGaGAccGUgCGAGcgguggccguGCCACCGa -3'
miRNA:   3'- aCAGC-GCCGGC-CU--CA-GCUC----------CGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 24920 0.67 0.366828
Target:  5'- -aUCGCGGCUGGcuacauGGUCGgccAGGUCACg- -3'
miRNA:   3'- acAGCGCCGGCC------UCAGC---UCCGGUGgu -5'
31898 3' -62.1 NC_006938.1 + 26880 0.7 0.240138
Target:  5'- -uUCGCGGUCGGGGcuaCGAGGacaACCAg -3'
miRNA:   3'- acAGCGCCGGCCUCa--GCUCCgg-UGGU- -5'
31898 3' -62.1 NC_006938.1 + 27820 0.66 0.427144
Target:  5'- gGUCgGCGGCCGGAaggGUC-AGGuCCAgCu -3'
miRNA:   3'- aCAG-CGCCGGCCU---CAGcUCC-GGUgGu -5'
31898 3' -62.1 NC_006938.1 + 28671 0.7 0.234294
Target:  5'- cGUCGCGGCUgGGAGU-GGGGCUcguuCCu -3'
miRNA:   3'- aCAGCGCCGG-CCUCAgCUCCGGu---GGu -5'
31898 3' -62.1 NC_006938.1 + 30743 0.66 0.436231
Target:  5'- --aCGCGGCCagcuuggcGGGGUUGucGGCCugCu -3'
miRNA:   3'- acaGCGCCGG--------CCUCAGCu-CCGGugGu -5'
31898 3' -62.1 NC_006938.1 + 32257 0.67 0.375078
Target:  5'- -uUCGuCGGCaGGGGaUGGGGCCugCAg -3'
miRNA:   3'- acAGC-GCCGgCCUCaGCUCCGGugGU- -5'
31898 3' -62.1 NC_006938.1 + 33377 0.69 0.2845
Target:  5'- gUGUgGCGGgUGG-GUCGAGaGCCggACCAu -3'
miRNA:   3'- -ACAgCGCCgGCCuCAGCUC-CGG--UGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.