miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31898 3' -62.1 NC_006938.1 + 54405 1.07 0.000376
Target:  5'- cUGUCGCGGCCGGAGUCGAGGCCACCAc -3'
miRNA:   3'- -ACAGCGCCGGCCUCAGCUCCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 51475 0.84 0.023805
Target:  5'- cGUCGCGGCCGGAgccggggcaGUCGAGGCgAUCGu -3'
miRNA:   3'- aCAGCGCCGGCCU---------CAGCUCCGgUGGU- -5'
31898 3' -62.1 NC_006938.1 + 13585 0.79 0.049038
Target:  5'- aG-CGCGGCCGGAGUCGAcaggaguggaGGUCACUAc -3'
miRNA:   3'- aCaGCGCCGGCCUCAGCU----------CCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 42423 0.74 0.12999
Target:  5'- cGaCGCGGCCGGAG-CGAcGCCuGCCAc -3'
miRNA:   3'- aCaGCGCCGGCCUCaGCUcCGG-UGGU- -5'
31898 3' -62.1 NC_006938.1 + 38932 0.71 0.182223
Target:  5'- aUGcCGUGGCCGGGGUCGuAGcGCCGg-- -3'
miRNA:   3'- -ACaGCGCCGGCCUCAGC-UC-CGGUggu -5'
31898 3' -62.1 NC_006938.1 + 15798 0.71 0.201701
Target:  5'- -cUC-CGGCCGGAGgaGAGGCCuCCAg -3'
miRNA:   3'- acAGcGCCGGCCUCagCUCCGGuGGU- -5'
31898 3' -62.1 NC_006938.1 + 28671 0.7 0.234294
Target:  5'- cGUCGCGGCUgGGAGU-GGGGCUcguuCCu -3'
miRNA:   3'- aCAGCGCCGG-CCUCAgCUCCGGu---GGu -5'
31898 3' -62.1 NC_006938.1 + 26880 0.7 0.240138
Target:  5'- -uUCGCGGUCGGGGcuaCGAGGacaACCAg -3'
miRNA:   3'- acAGCGCCGGCCUCa--GCUCCgg-UGGU- -5'
31898 3' -62.1 NC_006938.1 + 15653 0.7 0.246103
Target:  5'- aG-CGCGGUCGGcGUCGAGGUCGg-- -3'
miRNA:   3'- aCaGCGCCGGCCuCAGCUCCGGUggu -5'
31898 3' -62.1 NC_006938.1 + 45038 0.69 0.277786
Target:  5'- aGUCGagGGCCGccca-GAGGCCACCGu -3'
miRNA:   3'- aCAGCg-CCGGCcucagCUCCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 1052 0.69 0.2845
Target:  5'- gUGUCGCGGC--GAG-CGAGGUCGuCCGg -3'
miRNA:   3'- -ACAGCGCCGgcCUCaGCUCCGGU-GGU- -5'
31898 3' -62.1 NC_006938.1 + 33377 0.69 0.2845
Target:  5'- gUGUgGCGGgUGG-GUCGAGaGCCggACCAu -3'
miRNA:   3'- -ACAgCGCCgGCCuCAGCUC-CGG--UGGU- -5'
31898 3' -62.1 NC_006938.1 + 61151 0.67 0.335091
Target:  5'- cUGUCGUGGUUcGAGUUGAcGaCCACCAu -3'
miRNA:   3'- -ACAGCGCCGGcCUCAGCUcC-GGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 9116 0.67 0.342834
Target:  5'- cUGUCGUugaaGuCCGGGGUCGucaGGGCCGCgAg -3'
miRNA:   3'- -ACAGCGc---C-GGCCUCAGC---UCCGGUGgU- -5'
31898 3' -62.1 NC_006938.1 + 18136 0.67 0.350705
Target:  5'- gUGUgGCGGUgGGAccCGAGGaCGCCAu -3'
miRNA:   3'- -ACAgCGCCGgCCUcaGCUCCgGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 37525 0.67 0.350705
Target:  5'- cGcCGCcGCUGGcaagcuGGaCGAGGCCGCCAu -3'
miRNA:   3'- aCaGCGcCGGCC------UCaGCUCCGGUGGU- -5'
31898 3' -62.1 NC_006938.1 + 41854 0.67 0.358703
Target:  5'- cUGUCG-GGCUGGAGUUGccGUCGCUc -3'
miRNA:   3'- -ACAGCgCCGGCCUCAGCucCGGUGGu -5'
31898 3' -62.1 NC_006938.1 + 24920 0.67 0.366828
Target:  5'- -aUCGCGGCUGGcuacauGGUCGgccAGGUCACg- -3'
miRNA:   3'- acAGCGCCGGCC------UCAGC---UCCGGUGgu -5'
31898 3' -62.1 NC_006938.1 + 32257 0.67 0.375078
Target:  5'- -uUCGuCGGCaGGGGaUGGGGCCugCAg -3'
miRNA:   3'- acAGC-GCCGgCCUCaGCUCCGGugGU- -5'
31898 3' -62.1 NC_006938.1 + 24004 0.67 0.375078
Target:  5'- aGUCGaCGGCCGaGAccGUgCGAGcgguggccguGCCACCGa -3'
miRNA:   3'- aCAGC-GCCGGC-CU--CA-GCUC----------CGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.