Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 3' | -62.1 | NC_006938.1 | + | 17478 | 0.66 | 0.400572 |
Target: 5'- aUGUCGUuuccGGCCGugccGUCugccuGGGCCACCAg -3' miRNA: 3'- -ACAGCG----CCGGCcu--CAGc----UCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 56343 | 0.66 | 0.409312 |
Target: 5'- gUGUUGC-GCCGGAGcUCcAGGCCcugcGCCu -3' miRNA: 3'- -ACAGCGcCGGCCUC-AGcUCCGG----UGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 13536 | 0.66 | 0.41817 |
Target: 5'- -cUCGCGuuCCaGAGgCGGGGCCACCc -3' miRNA: 3'- acAGCGCc-GGcCUCaGCUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 21038 | 0.66 | 0.41817 |
Target: 5'- gGUCGgGGCgguggcgucgaUGGAGuUCGAGGgaaCCGCCu -3' miRNA: 3'- aCAGCgCCG-----------GCCUC-AGCUCC---GGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 21120 | 0.66 | 0.41817 |
Target: 5'- cUGUCcgacUGGCUGGAGUCccgcgcGGGCCACgAg -3' miRNA: 3'- -ACAGc---GCCGGCCUCAGc-----UCCGGUGgU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 27820 | 0.66 | 0.427144 |
Target: 5'- gGUCgGCGGCCGGAaggGUC-AGGuCCAgCu -3' miRNA: 3'- aCAG-CGCCGGCCU---CAGcUCC-GGUgGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 803 | 0.66 | 0.430765 |
Target: 5'- gUGUUGCcaGCCGGuGUggccgccuccgugccCGAGGCCuCCAa -3' miRNA: 3'- -ACAGCGc-CGGCCuCA---------------GCUCCGGuGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 968 | 0.66 | 0.436231 |
Target: 5'- gUGUC-CaGCCGGAG-C-AGGCCACUg -3' miRNA: 3'- -ACAGcGcCGGCCUCaGcUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 30743 | 0.66 | 0.436231 |
Target: 5'- --aCGCGGCCagcuuggcGGGGUUGucGGCCugCu -3' miRNA: 3'- acaGCGCCGG--------CCUCAGCu-CCGGugGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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