Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 3' | -62.1 | NC_006938.1 | + | 54405 | 1.07 | 0.000376 |
Target: 5'- cUGUCGCGGCCGGAGUCGAGGCCACCAc -3' miRNA: 3'- -ACAGCGCCGGCCUCAGCUCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 21120 | 0.66 | 0.41817 |
Target: 5'- cUGUCcgacUGGCUGGAGUCccgcgcGGGCCACgAg -3' miRNA: 3'- -ACAGc---GCCGGCCUCAGc-----UCCGGUGgU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 32257 | 0.67 | 0.375078 |
Target: 5'- -uUCGuCGGCaGGGGaUGGGGCCugCAg -3' miRNA: 3'- acAGC-GCCGgCCUCaGCUCCGGugGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 24920 | 0.67 | 0.366828 |
Target: 5'- -aUCGCGGCUGGcuacauGGUCGgccAGGUCACg- -3' miRNA: 3'- acAGCGCCGGCC------UCAGC---UCCGGUGgu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 41854 | 0.67 | 0.358703 |
Target: 5'- cUGUCG-GGCUGGAGUUGccGUCGCUc -3' miRNA: 3'- -ACAGCgCCGGCCUCAGCucCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 37525 | 0.67 | 0.350705 |
Target: 5'- cGcCGCcGCUGGcaagcuGGaCGAGGCCGCCAu -3' miRNA: 3'- aCaGCGcCGGCC------UCaGCUCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 18136 | 0.67 | 0.350705 |
Target: 5'- gUGUgGCGGUgGGAccCGAGGaCGCCAu -3' miRNA: 3'- -ACAgCGCCGgCCUcaGCUCCgGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 15653 | 0.7 | 0.246103 |
Target: 5'- aG-CGCGGUCGGcGUCGAGGUCGg-- -3' miRNA: 3'- aCaGCGCCGGCCuCAGCUCCGGUggu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 26880 | 0.7 | 0.240138 |
Target: 5'- -uUCGCGGUCGGGGcuaCGAGGacaACCAg -3' miRNA: 3'- acAGCGCCGGCCUCa--GCUCCgg-UGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 28671 | 0.7 | 0.234294 |
Target: 5'- cGUCGCGGCUgGGAGU-GGGGCUcguuCCu -3' miRNA: 3'- aCAGCGCCGG-CCUCAgCUCCGGu---GGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 42423 | 0.74 | 0.12999 |
Target: 5'- cGaCGCGGCCGGAG-CGAcGCCuGCCAc -3' miRNA: 3'- aCaGCGCCGGCCUCaGCUcCGG-UGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 51475 | 0.84 | 0.023805 |
Target: 5'- cGUCGCGGCCGGAgccggggcaGUCGAGGCgAUCGu -3' miRNA: 3'- aCAGCGCCGGCCU---------CAGCUCCGgUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 17478 | 0.66 | 0.400572 |
Target: 5'- aUGUCGUuuccGGCCGugccGUCugccuGGGCCACCAg -3' miRNA: 3'- -ACAGCG----CCGGCcu--CAGc----UCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 56343 | 0.66 | 0.409312 |
Target: 5'- gUGUUGC-GCCGGAGcUCcAGGCCcugcGCCu -3' miRNA: 3'- -ACAGCGcCGGCCUC-AGcUCCGG----UGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 13536 | 0.66 | 0.41817 |
Target: 5'- -cUCGCGuuCCaGAGgCGGGGCCACCc -3' miRNA: 3'- acAGCGCc-GGcCUCaGCUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 21038 | 0.66 | 0.41817 |
Target: 5'- gGUCGgGGCgguggcgucgaUGGAGuUCGAGGgaaCCGCCu -3' miRNA: 3'- aCAGCgCCG-----------GCCUC-AGCUCC---GGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 27820 | 0.66 | 0.427144 |
Target: 5'- gGUCgGCGGCCGGAaggGUC-AGGuCCAgCu -3' miRNA: 3'- aCAG-CGCCGGCCU---CAGcUCC-GGUgGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 803 | 0.66 | 0.430765 |
Target: 5'- gUGUUGCcaGCCGGuGUggccgccuccgugccCGAGGCCuCCAa -3' miRNA: 3'- -ACAGCGc-CGGCCuCA---------------GCUCCGGuGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 968 | 0.66 | 0.436231 |
Target: 5'- gUGUC-CaGCCGGAG-C-AGGCCACUg -3' miRNA: 3'- -ACAGcGcCGGCCUCaGcUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 13585 | 0.79 | 0.049038 |
Target: 5'- aG-CGCGGCCGGAGUCGAcaggaguggaGGUCACUAc -3' miRNA: 3'- aCaGCGCCGGCCUCAGCU----------CCGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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