miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31898 5' -53.9 NC_006938.1 + 20303 0.66 0.868807
Target:  5'- --gGACGgcACUCCGGACgUCAACcACAu -3'
miRNA:   3'- ggaCUGC--UGGGGCCUGaAGUUGcUGU- -5'
31898 5' -53.9 NC_006938.1 + 58594 0.66 0.868807
Target:  5'- gCCUGGgcacUGuccCCCUGGGCga-GACGACAg -3'
miRNA:   3'- -GGACU----GCu--GGGGCCUGaagUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 58039 0.66 0.85264
Target:  5'- --gGACGGCCuuGGcauuGCUgcCAGCGGCGg -3'
miRNA:   3'- ggaCUGCUGGggCC----UGAa-GUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 12083 0.66 0.835578
Target:  5'- gCCUcGACuGCCCCGG-CUcCGgccGCGACGa -3'
miRNA:   3'- -GGA-CUGcUGGGGCCuGAaGU---UGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 62281 0.66 0.835578
Target:  5'- cCCUG-C--UCCUGGGCUUCGACGcGCAg -3'
miRNA:   3'- -GGACuGcuGGGGCCUGAAGUUGC-UGU- -5'
31898 5' -53.9 NC_006938.1 + 26030 0.66 0.835578
Target:  5'- -aUGGCGGCCUCGuccaGCUUgcCAGCGGCGg -3'
miRNA:   3'- ggACUGCUGGGGCc---UGAA--GUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 22416 0.67 0.817687
Target:  5'- gCgaGACGGCCCUGG---UCAugcGCGGCAa -3'
miRNA:   3'- -GgaCUGCUGGGGCCugaAGU---UGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 61680 0.67 0.817687
Target:  5'- --cGGCGGCgcggCCCGGACcUCuguGACGACGc -3'
miRNA:   3'- ggaCUGCUG----GGGCCUGaAG---UUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 1792 0.67 0.808454
Target:  5'- uCCUGccgaccgccgcGCGACCCCuguccGGGCUUCAGaccuacacCGGCu -3'
miRNA:   3'- -GGAC-----------UGCUGGGG-----CCUGAAGUU--------GCUGu -5'
31898 5' -53.9 NC_006938.1 + 33770 0.67 0.799041
Target:  5'- uCCgccaACGACCCCGG-CUggaagCAguACGACGc -3'
miRNA:   3'- -GGac--UGCUGGGGCCuGAa----GU--UGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 40252 0.67 0.799041
Target:  5'- cCCUGGCaaACUCgaCGGACaUCGACGACu -3'
miRNA:   3'- -GGACUGc-UGGG--GCCUGaAGUUGCUGu -5'
31898 5' -53.9 NC_006938.1 + 40435 0.67 0.799041
Target:  5'- aCC-GACGccGCgCCGGACUUUguccgugucgggGACGACAc -3'
miRNA:   3'- -GGaCUGC--UGgGGCCUGAAG------------UUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 48336 0.67 0.799041
Target:  5'- gCCUGA--ACCCCGG-CUcgGGCGGCGg -3'
miRNA:   3'- -GGACUgcUGGGGCCuGAagUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 53386 0.67 0.799041
Target:  5'- aCCUgGACG-UCCUGGGCUUCcugGACAg -3'
miRNA:   3'- -GGA-CUGCuGGGGCCUGAAGuugCUGU- -5'
31898 5' -53.9 NC_006938.1 + 35081 0.67 0.789459
Target:  5'- cCCUGACGAUCUagaGGAagaugaCGAUGACGa -3'
miRNA:   3'- -GGACUGCUGGGg--CCUgaa---GUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 4830 0.67 0.779718
Target:  5'- aCCUGGCaccGGCCgaGGAgUUCGGCGAg- -3'
miRNA:   3'- -GGACUG---CUGGggCCUgAAGUUGCUgu -5'
31898 5' -53.9 NC_006938.1 + 61917 0.67 0.779718
Target:  5'- aCC-GACGgcACCCUGGGCUUCuuuacguuUGACAc -3'
miRNA:   3'- -GGaCUGC--UGGGGCCUGAAGuu------GCUGU- -5'
31898 5' -53.9 NC_006938.1 + 29297 0.68 0.769829
Target:  5'- aCCUGguGCGACgccaCCgGGACggaGACGACAu -3'
miRNA:   3'- -GGAC--UGCUG----GGgCCUGaagUUGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 20627 0.68 0.759802
Target:  5'- aCCUGACaGGCaaCUCGGACUUUu-UGACAg -3'
miRNA:   3'- -GGACUG-CUG--GGGCCUGAAGuuGCUGU- -5'
31898 5' -53.9 NC_006938.1 + 10213 0.69 0.686679
Target:  5'- --gGACGuucucacagucGCCCaGGGCUUCGugGACAg -3'
miRNA:   3'- ggaCUGC-----------UGGGgCCUGAAGUugCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.