Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 5' | -53.9 | NC_006938.1 | + | 29297 | 0.68 | 0.769829 |
Target: 5'- aCCUGguGCGACgccaCCgGGACggaGACGACAu -3' miRNA: 3'- -GGAC--UGCUG----GGgCCUGaagUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 4830 | 0.67 | 0.779718 |
Target: 5'- aCCUGGCaccGGCCgaGGAgUUCGGCGAg- -3' miRNA: 3'- -GGACUG---CUGGggCCUgAAGUUGCUgu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 61917 | 0.67 | 0.779718 |
Target: 5'- aCC-GACGgcACCCUGGGCUUCuuuacguuUGACAc -3' miRNA: 3'- -GGaCUGC--UGGGGCCUGAAGuu------GCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 27369 | 0.7 | 0.632705 |
Target: 5'- -aUGGCGuCCCCGucGAUggCAGCGACAc -3' miRNA: 3'- ggACUGCuGGGGC--CUGaaGUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 60993 | 0.69 | 0.665169 |
Target: 5'- gCCUGGaGACCCCGGcguGCUgCAGgGACc -3' miRNA: 3'- -GGACUgCUGGGGCC---UGAaGUUgCUGu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 12083 | 0.66 | 0.835578 |
Target: 5'- gCCUcGACuGCCCCGG-CUcCGgccGCGACGa -3' miRNA: 3'- -GGA-CUGcUGGGGCCuGAaGU---UGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 26030 | 0.66 | 0.835578 |
Target: 5'- -aUGGCGGCCUCGuccaGCUUgcCAGCGGCGg -3' miRNA: 3'- ggACUGCUGGGGCc---UGAA--GUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 58039 | 0.66 | 0.85264 |
Target: 5'- --gGACGGCCuuGGcauuGCUgcCAGCGGCGg -3' miRNA: 3'- ggaCUGCUGGggCC----UGAa-GUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 47819 | 0.85 | 0.090529 |
Target: 5'- gUCUGgcGCGACCCCGGACgcggacaUCAGCGGCAg -3' miRNA: 3'- -GGAC--UGCUGGGGCCUGa------AGUUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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