miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31899 5' -54.1 NC_006938.1 + 62758 0.67 0.757974
Target:  5'- aGCGaCGugGUAccaGGUguccACUGCCAugaccguggUCCCg -3'
miRNA:   3'- -CGCaGCugCAUa--CCG----UGACGGU---------AGGG- -5'
31899 5' -54.1 NC_006938.1 + 111 0.67 0.768074
Target:  5'- cGCGUCGACG-GUGGUcgaGCCAcCgCCa -3'
miRNA:   3'- -CGCAGCUGCaUACCGugaCGGUaG-GG- -5'
31899 5' -54.1 NC_006938.1 + 37908 0.67 0.794629
Target:  5'- aGUGacacCGACGUugucucgugucacaAUGGCACcGUCGUCCUc -3'
miRNA:   3'- -CGCa---GCUGCA--------------UACCGUGaCGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 34680 0.66 0.816304
Target:  5'- gGCGUCGGCGUccGUcGGCAg-GUCGagCCg -3'
miRNA:   3'- -CGCAGCUGCA--UA-CCGUgaCGGUagGG- -5'
31899 5' -54.1 NC_006938.1 + 56142 0.66 0.816304
Target:  5'- aUGUCGACcUGgaaggaGGCGCUGUCGUCa- -3'
miRNA:   3'- cGCAGCUGcAUa-----CCGUGACGGUAGgg -5'
31899 5' -54.1 NC_006938.1 + 44726 0.66 0.834342
Target:  5'- aGgGgaaGAUGUgcaucGUGGgACUGCCGUCgCCu -3'
miRNA:   3'- -CgCag-CUGCA-----UACCgUGACGGUAG-GG- -5'
31899 5' -54.1 NC_006938.1 + 37250 0.66 0.834342
Target:  5'- aGCGgCGGCGcuaGUGGCGCgacUCGUUCCa -3'
miRNA:   3'- -CGCaGCUGCa--UACCGUGac-GGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 20388 0.73 0.413797
Target:  5'- -gGUUGACGUccGG-AgUGCCGUCCCg -3'
miRNA:   3'- cgCAGCUGCAuaCCgUgACGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 9844 0.71 0.543785
Target:  5'- cGCGUUGGCGag-GGCugUGaCacccaGUCCCa -3'
miRNA:   3'- -CGCAGCUGCauaCCGugAC-Gg----UAGGG- -5'
31899 5' -54.1 NC_006938.1 + 53851 0.69 0.671404
Target:  5'- cGCGUCGaaguucaagagcagcGCGUAUGGCGCggcgagguucagcagUGUCgAUCCa -3'
miRNA:   3'- -CGCAGC---------------UGCAUACCGUG---------------ACGG-UAGGg -5'
31899 5' -54.1 NC_006938.1 + 27255 0.68 0.726961
Target:  5'- cGCcUCGACGU--GGCGC-GCCAUCg- -3'
miRNA:   3'- -CGcAGCUGCAuaCCGUGaCGGUAGgg -5'
31899 5' -54.1 NC_006938.1 + 42003 0.74 0.386577
Target:  5'- uCGUCGAac-GUGGCAUcagUGCCAUCCUc -3'
miRNA:   3'- cGCAGCUgcaUACCGUG---ACGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 17054 0.68 0.716424
Target:  5'- cGCGUUGAUGccguUGGCACggaGCCAagUCUg -3'
miRNA:   3'- -CGCAGCUGCau--ACCGUGa--CGGU--AGGg -5'
31899 5' -54.1 NC_006938.1 + 53499 0.7 0.630096
Target:  5'- -gGUCGGucuCGgugagGGCACUGCUGUCCa -3'
miRNA:   3'- cgCAGCU---GCaua--CCGUGACGGUAGGg -5'
31899 5' -54.1 NC_006938.1 + 16041 0.75 0.335797
Target:  5'- cGCGUCGGCGUAUcgGGC-CUcGCCccugCCCu -3'
miRNA:   3'- -CGCAGCUGCAUA--CCGuGA-CGGua--GGG- -5'
31899 5' -54.1 NC_006938.1 + 24389 0.68 0.695116
Target:  5'- cCGUCGAgcaccuCGUGgaGGCGCuuguUGCCGUCCa -3'
miRNA:   3'- cGCAGCU------GCAUa-CCGUG----ACGGUAGGg -5'
31899 5' -54.1 NC_006938.1 + 38858 0.67 0.768074
Target:  5'- uCGUUGGCGUAgucaGCACUGUCGUUg- -3'
miRNA:   3'- cGCAGCUGCAUac--CGUGACGGUAGgg -5'
31899 5' -54.1 NC_006938.1 + 54545 0.7 0.619208
Target:  5'- ---aCcACGUggGGCACUGCCGUCUUg -3'
miRNA:   3'- cgcaGcUGCAuaCCGUGACGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 8299 0.66 0.843053
Target:  5'- -gGUCGGCGaccGGCucguCUGCCuGUCCa -3'
miRNA:   3'- cgCAGCUGCauaCCGu---GACGG-UAGGg -5'
31899 5' -54.1 NC_006938.1 + 58580 0.66 0.816304
Target:  5'- gGCGcUCGugGaUGgccugGGCACUGUCc-CCCu -3'
miRNA:   3'- -CGC-AGCugC-AUa----CCGUGACGGuaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.