miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 39008 0.66 0.976304
Target:  5'- --uGGCCucUGGCAGCGCGcGGCgGCGGa -3'
miRNA:   3'- cuuCUGGuaGCUGUUGUGC-UUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 23106 0.69 0.906766
Target:  5'- gGAGGAgUGUCGucccCGACACGGacaaaguccgGCGCGGc -3'
miRNA:   3'- -CUUCUgGUAGCu---GUUGUGCU----------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 48111 0.69 0.892768
Target:  5'- cGAGGCCAgCGGCccacaucuGCACGAcgACGCGa -3'
miRNA:   3'- cUUCUGGUaGCUGu-------UGUGCU--UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 5188 0.81 0.310531
Target:  5'- -uGGGCCAgCGGCAGCAgGAACGCGa -3'
miRNA:   3'- cuUCUGGUaGCUGUUGUgCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 4549 0.66 0.96717
Target:  5'- gGAGGcACCGUCGuCGGCcACGAggauugaggcaGCGCGc -3'
miRNA:   3'- -CUUC-UGGUAGCuGUUG-UGCU-----------UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 23535 0.66 0.96717
Target:  5'- -cAGGCCAcUUGGCAAUGCGAuCGUGc -3'
miRNA:   3'- cuUCUGGU-AGCUGUUGUGCUuGCGCc -5'
31905 3' -49.8 NC_006938.1 + 12172 0.66 0.966828
Target:  5'- --cGGCCAcacgcucUCGAacuGCugGAGCgGCGGg -3'
miRNA:   3'- cuuCUGGU-------AGCUgu-UGugCUUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 57180 0.67 0.959845
Target:  5'- -cAGACUgAUCGcCuucuGgACGAACGCGGa -3'
miRNA:   3'- cuUCUGG-UAGCuGu---UgUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56360 0.67 0.951464
Target:  5'- -cAGGCCcugCGccugguCAACGCGGACGCGc -3'
miRNA:   3'- cuUCUGGua-GCu-----GUUGUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 53886 0.69 0.906766
Target:  5'- -uGGcCCGUCGACAACGuuguccauGGCGCGGa -3'
miRNA:   3'- cuUCuGGUAGCUGUUGUgc------UUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 59221 0.68 0.936828
Target:  5'- ---uGCCuUCG-CAGCucgGCGAGCGCGGu -3'
miRNA:   3'- cuucUGGuAGCuGUUG---UGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 29985 0.67 0.953227
Target:  5'- uGAG-CCggUGGCGGCACGGuugccgacgaaccggACGCGGu -3'
miRNA:   3'- cUUCuGGuaGCUGUUGUGCU---------------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 61563 0.66 0.970454
Target:  5'- aGAGGACCuccaCGAuCAGCGCGccauagguGugGUGGa -3'
miRNA:   3'- -CUUCUGGua--GCU-GUUGUGC--------UugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 12257 0.68 0.913346
Target:  5'- -uGGACCA-CGGCcuGCACGGuCGUGGc -3'
miRNA:   3'- cuUCUGGUaGCUGu-UGUGCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 51103 0.66 0.970454
Target:  5'- gGAAGGCgAUCGuggcgauCAGCACGcg-GCGGu -3'
miRNA:   3'- -CUUCUGgUAGCu------GUUGUGCuugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 5768 0.67 0.959845
Target:  5'- --uGGCCGUCGACGA---GAACGUGa -3'
miRNA:   3'- cuuCUGGUAGCUGUUgugCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 13446 0.69 0.906766
Target:  5'- cGAAGgugcgaaugacACCcUCGGCGGCgACGAuCGCGGc -3'
miRNA:   3'- -CUUC-----------UGGuAGCUGUUG-UGCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28657 0.69 0.899906
Target:  5'- -uGGACCAggUCGGcCGGgGCGAACGUGu -3'
miRNA:   3'- cuUCUGGU--AGCU-GUUgUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 17729 0.66 0.96717
Target:  5'- cAAGAcaaccgucucuCCAUCGGCGggcuGCGCGGagaACGUGGc -3'
miRNA:   3'- cUUCU-----------GGUAGCUGU----UGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 11506 0.66 0.96717
Target:  5'- cGAAGu---UgGACAGCGCGGacgACGCGGc -3'
miRNA:   3'- -CUUCugguAgCUGUUGUGCU---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.