miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31911 3' -55.1 NC_006938.1 + 96 0.72 0.399927
Target:  5'- gGGGACGuucAGCUCGCGaGCGgCCUGCUu -3'
miRNA:   3'- -UUCUGCuacUUGAGCGC-CGU-GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 685 0.72 0.399927
Target:  5'- cGGGGCGGUGAAgUUCGCuGuGUACCUcGCCa -3'
miRNA:   3'- -UUCUGCUACUU-GAGCG-C-CGUGGA-CGG- -5'
31911 3' -55.1 NC_006938.1 + 2754 0.69 0.581835
Target:  5'- uGGACGggGucuACUcggcgggauccugCGCGGUcgACCUGCCa -3'
miRNA:   3'- uUCUGCuaCu--UGA-------------GCGCCG--UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 2933 0.7 0.518552
Target:  5'- aGAGACGAUgGAGCUCGCcGCcCCgaugGCg -3'
miRNA:   3'- -UUCUGCUA-CUUGAGCGcCGuGGa---CGg -5'
31911 3' -55.1 NC_006938.1 + 14082 0.66 0.755988
Target:  5'- gAAGACGGUGucgUCGaCGGCGgccgacuggauCUUGCCg -3'
miRNA:   3'- -UUCUGCUACuugAGC-GCCGU-----------GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 14315 0.66 0.765192
Target:  5'- -uGGCGAUGAGCgccuucuuggcaaUCGCGGCGCg---- -3'
miRNA:   3'- uuCUGCUACUUG-------------AGCGCCGUGgacgg -5'
31911 3' -55.1 NC_006938.1 + 18830 0.67 0.702149
Target:  5'- -cGACGA-GGGCgCGCGGCugUuugagacauuccaUGCCa -3'
miRNA:   3'- uuCUGCUaCUUGaGCGCCGugG-------------ACGG- -5'
31911 3' -55.1 NC_006938.1 + 18968 0.66 0.766207
Target:  5'- gGAGACGAcggacUGAACUacUGgGGCACCcacaagGCa -3'
miRNA:   3'- -UUCUGCU-----ACUUGA--GCgCCGUGGa-----CGg -5'
31911 3' -55.1 NC_006938.1 + 20514 0.7 0.487413
Target:  5'- --aGCGAUGucCUUG-GGCACCUGUCg -3'
miRNA:   3'- uucUGCUACuuGAGCgCCGUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 21648 0.67 0.703227
Target:  5'- cAGGGCGAcgUGGGCcgcgCGCGGguCCaGCUg -3'
miRNA:   3'- -UUCUGCU--ACUUGa---GCGCCguGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 23649 0.66 0.713963
Target:  5'- cGGACGGUGg---CGCGGUcuACCUcguGCCg -3'
miRNA:   3'- uUCUGCUACuugaGCGCCG--UGGA---CGG- -5'
31911 3' -55.1 NC_006938.1 + 24444 0.69 0.572048
Target:  5'- uGGGAC-AUGGGCUucggccCGUGGCACC-GCCu -3'
miRNA:   3'- -UUCUGcUACUUGA------GCGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 24902 0.72 0.390837
Target:  5'- --cGCGAUGGAgUCaGCGGgauccuCACCUGCCa -3'
miRNA:   3'- uucUGCUACUUgAG-CGCC------GUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 26672 0.69 0.55045
Target:  5'- cAGAgCGGUGAGCUCuGUcuGCACCUGaCCu -3'
miRNA:   3'- uUCU-GCUACUUGAG-CGc-CGUGGAC-GG- -5'
31911 3' -55.1 NC_006938.1 + 29329 0.75 0.251342
Target:  5'- -cGAgGAUGAGCaCGCGGUAcuucuCCUGCCa -3'
miRNA:   3'- uuCUgCUACUUGaGCGCCGU-----GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 33041 0.67 0.659702
Target:  5'- cAGGugGAgGAGCUccgucCGUGGCgACCUGUa -3'
miRNA:   3'- -UUCugCUaCUUGA-----GCGCCG-UGGACGg -5'
31911 3' -55.1 NC_006938.1 + 37416 0.69 0.56122
Target:  5'- uAGACGuuGUGGuagACccggCGCGGCccgugGCCUGCCa -3'
miRNA:   3'- uUCUGC--UACU---UGa---GCGCCG-----UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 38871 0.69 0.55045
Target:  5'- cGGGACaGAacGGCUCGaacacCGGCACCUGCUc -3'
miRNA:   3'- -UUCUG-CUacUUGAGC-----GCCGUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 43200 0.66 0.745642
Target:  5'- -cGGCG-UGucCUCGCGG-ACCgGCCa -3'
miRNA:   3'- uuCUGCuACuuGAGCGCCgUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 45093 0.73 0.347459
Target:  5'- cGGGGCGAUGucCUCGUcgcgggacGGCugCUGCUg -3'
miRNA:   3'- -UUCUGCUACuuGAGCG--------CCGugGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.