miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31911 3' -55.1 NC_006938.1 + 63320 1.1 0.000933
Target:  5'- cAAGACGAUGAACUCGCGGCACCUGCCg -3'
miRNA:   3'- -UUCUGCUACUUGAGCGCCGUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 62982 0.66 0.745642
Target:  5'- cAGGCG--GAGcCUCuCGGCACCgGCCu -3'
miRNA:   3'- uUCUGCuaCUU-GAGcGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 61411 0.66 0.713963
Target:  5'- cAGACcAUGucggCGUGGCACCgGCCc -3'
miRNA:   3'- uUCUGcUACuugaGCGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 58910 0.66 0.745642
Target:  5'- --aACGGUGAGCUugaCGCGGCcaucaCUGCg -3'
miRNA:   3'- uucUGCUACUUGA---GCGCCGug---GACGg -5'
31911 3' -55.1 NC_006938.1 + 57966 0.71 0.467151
Target:  5'- cAGGACGGgugGGACg-GCGGCucCCUGCUc -3'
miRNA:   3'- -UUCUGCUa--CUUGagCGCCGu-GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 57119 0.66 0.713963
Target:  5'- uGGucuCGAUGAGCUCGU---GCUUGCCa -3'
miRNA:   3'- uUCu--GCUACUUGAGCGccgUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 56444 0.66 0.745642
Target:  5'- cGGACG--GAGCUCGUGGaGCUUGaCCu -3'
miRNA:   3'- uUCUGCuaCUUGAGCGCCgUGGAC-GG- -5'
31911 3' -55.1 NC_006938.1 + 54397 0.66 0.745642
Target:  5'- -cGGCGGUGGccagaGCUgGCGacGCACUUGCa -3'
miRNA:   3'- uuCUGCUACU-----UGAgCGC--CGUGGACGg -5'
31911 3' -55.1 NC_006938.1 + 54089 0.66 0.766207
Target:  5'- -cGGCGAUGGuCUCGCaGUACUUGa- -3'
miRNA:   3'- uuCUGCUACUuGAGCGcCGUGGACgg -5'
31911 3' -55.1 NC_006938.1 + 51939 0.79 0.151322
Target:  5'- -cGGCGGUGGGCUCgGCGGUGCC-GCCc -3'
miRNA:   3'- uuCUGCUACUUGAG-CGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 51499 0.67 0.670649
Target:  5'- cGAGGCGAUcGucGCcgCGUGGaacaACCUGCCc -3'
miRNA:   3'- -UUCUGCUA-Cu-UGa-GCGCCg---UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 46977 0.66 0.755988
Target:  5'- -cGACGAgUGGGCgCGCGuCACCgugcGCCa -3'
miRNA:   3'- uuCUGCU-ACUUGaGCGCcGUGGa---CGG- -5'
31911 3' -55.1 NC_006938.1 + 46181 0.69 0.582924
Target:  5'- gGGGAgGGUGGACaUGUcuGGCGgCUGCCa -3'
miRNA:   3'- -UUCUgCUACUUGaGCG--CCGUgGACGG- -5'
31911 3' -55.1 NC_006938.1 + 45093 0.73 0.347459
Target:  5'- cGGGGCGAUGucCUCGUcgcgggacGGCugCUGCUg -3'
miRNA:   3'- -UUCUGCUACuuGAGCG--------CCGugGACGG- -5'
31911 3' -55.1 NC_006938.1 + 43200 0.66 0.745642
Target:  5'- -cGGCG-UGucCUCGCGG-ACCgGCCa -3'
miRNA:   3'- uuCUGCuACuuGAGCGCCgUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 38871 0.69 0.55045
Target:  5'- cGGGACaGAacGGCUCGaacacCGGCACCUGCUc -3'
miRNA:   3'- -UUCUG-CUacUUGAGC-----GCCGUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 37416 0.69 0.56122
Target:  5'- uAGACGuuGUGGuagACccggCGCGGCccgugGCCUGCCa -3'
miRNA:   3'- uUCUGC--UACU---UGa---GCGCCG-----UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 33041 0.67 0.659702
Target:  5'- cAGGugGAgGAGCUccgucCGUGGCgACCUGUa -3'
miRNA:   3'- -UUCugCUaCUUGA-----GCGCCG-UGGACGg -5'
31911 3' -55.1 NC_006938.1 + 29329 0.75 0.251342
Target:  5'- -cGAgGAUGAGCaCGCGGUAcuucuCCUGCCa -3'
miRNA:   3'- uuCUgCUACUUGaGCGCCGU-----GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 26672 0.69 0.55045
Target:  5'- cAGAgCGGUGAGCUCuGUcuGCACCUGaCCu -3'
miRNA:   3'- uUCU-GCUACUUGAG-CGc-CGUGGAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.