Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31911 | 3' | -55.1 | NC_006938.1 | + | 63320 | 1.1 | 0.000933 |
Target: 5'- cAAGACGAUGAACUCGCGGCACCUGCCg -3' miRNA: 3'- -UUCUGCUACUUGAGCGCCGUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 18968 | 0.66 | 0.766207 |
Target: 5'- gGAGACGAcggacUGAACUacUGgGGCACCcacaagGCa -3' miRNA: 3'- -UUCUGCU-----ACUUGA--GCgCCGUGGa-----CGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 46977 | 0.66 | 0.755988 |
Target: 5'- -cGACGAgUGGGCgCGCGuCACCgugcGCCa -3' miRNA: 3'- uuCUGCU-ACUUGaGCGCcGUGGa---CGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 58910 | 0.66 | 0.745642 |
Target: 5'- --aACGGUGAGCUugaCGCGGCcaucaCUGCg -3' miRNA: 3'- uucUGCUACUUGA---GCGCCGug---GACGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 23649 | 0.66 | 0.713963 |
Target: 5'- cGGACGGUGg---CGCGGUcuACCUcguGCCg -3' miRNA: 3'- uUCUGCUACuugaGCGCCG--UGGA---CGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 61411 | 0.66 | 0.713963 |
Target: 5'- cAGACcAUGucggCGUGGCACCgGCCc -3' miRNA: 3'- uUCUGcUACuugaGCGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 21648 | 0.67 | 0.703227 |
Target: 5'- cAGGGCGAcgUGGGCcgcgCGCGGguCCaGCUg -3' miRNA: 3'- -UUCUGCU--ACUUGa---GCGCCguGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 18830 | 0.67 | 0.702149 |
Target: 5'- -cGACGA-GGGCgCGCGGCugUuugagacauuccaUGCCa -3' miRNA: 3'- uuCUGCUaCUUGaGCGCCGugG-------------ACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 51499 | 0.67 | 0.670649 |
Target: 5'- cGAGGCGAUcGucGCcgCGUGGaacaACCUGCCc -3' miRNA: 3'- -UUCUGCUA-Cu-UGa-GCGCCg---UGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 51939 | 0.79 | 0.151322 |
Target: 5'- -cGGCGGUGGGCUCgGCGGUGCC-GCCc -3' miRNA: 3'- uuCUGCUACUUGAG-CGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 57966 | 0.71 | 0.467151 |
Target: 5'- cAGGACGGgugGGACg-GCGGCucCCUGCUc -3' miRNA: 3'- -UUCUGCUa--CUUGagCGCCGu-GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 20514 | 0.7 | 0.487413 |
Target: 5'- --aGCGAUGucCUUG-GGCACCUGUCg -3' miRNA: 3'- uucUGCUACuuGAGCgCCGUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 24444 | 0.69 | 0.572048 |
Target: 5'- uGGGAC-AUGGGCUucggccCGUGGCACC-GCCu -3' miRNA: 3'- -UUCUGcUACUUGA------GCGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 2754 | 0.69 | 0.581835 |
Target: 5'- uGGACGggGucuACUcggcgggauccugCGCGGUcgACCUGCCa -3' miRNA: 3'- uUCUGCuaCu--UGA-------------GCGCCG--UGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 33041 | 0.67 | 0.659702 |
Target: 5'- cAGGugGAgGAGCUccgucCGUGGCgACCUGUa -3' miRNA: 3'- -UUCugCUaCUUGA-----GCGCCG-UGGACGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 29329 | 0.75 | 0.251342 |
Target: 5'- -cGAgGAUGAGCaCGCGGUAcuucuCCUGCCa -3' miRNA: 3'- uuCUgCUACUUGaGCGCCGU-----GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 14315 | 0.66 | 0.765192 |
Target: 5'- -uGGCGAUGAGCgccuucuuggcaaUCGCGGCGCg---- -3' miRNA: 3'- uuCUGCUACUUG-------------AGCGCCGUGgacgg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 14082 | 0.66 | 0.755988 |
Target: 5'- gAAGACGGUGucgUCGaCGGCGgccgacuggauCUUGCCg -3' miRNA: 3'- -UUCUGCUACuugAGC-GCCGU-----------GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 62982 | 0.66 | 0.745642 |
Target: 5'- cAGGCG--GAGcCUCuCGGCACCgGCCu -3' miRNA: 3'- uUCUGCuaCUU-GAGcGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 56444 | 0.66 | 0.745642 |
Target: 5'- cGGACG--GAGCUCGUGGaGCUUGaCCu -3' miRNA: 3'- uUCUGCuaCUUGAGCGCCgUGGAC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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