miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31911 3' -55.1 NC_006938.1 + 24902 0.72 0.390837
Target:  5'- --cGCGAUGGAgUCaGCGGgauccuCACCUGCCa -3'
miRNA:   3'- uucUGCUACUUgAG-CGCC------GUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 45093 0.73 0.347459
Target:  5'- cGGGGCGAUGucCUCGUcgcgggacGGCugCUGCUg -3'
miRNA:   3'- -UUCUGCUACuuGAGCG--------CCGugGACGG- -5'
31911 3' -55.1 NC_006938.1 + 37416 0.69 0.56122
Target:  5'- uAGACGuuGUGGuagACccggCGCGGCccgugGCCUGCCa -3'
miRNA:   3'- uUCUGC--UACU---UGa---GCGCCG-----UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 46181 0.69 0.582924
Target:  5'- gGGGAgGGUGGACaUGUcuGGCGgCUGCCa -3'
miRNA:   3'- -UUCUgCUACUUGaGCG--CCGUgGACGG- -5'
31911 3' -55.1 NC_006938.1 + 57119 0.66 0.713963
Target:  5'- uGGucuCGAUGAGCUCGU---GCUUGCCa -3'
miRNA:   3'- uUCu--GCUACUUGAGCGccgUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 43200 0.66 0.745642
Target:  5'- -cGGCG-UGucCUCGCGG-ACCgGCCa -3'
miRNA:   3'- uuCUGCuACuuGAGCGCCgUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 54397 0.66 0.745642
Target:  5'- -cGGCGGUGGccagaGCUgGCGacGCACUUGCa -3'
miRNA:   3'- uuCUGCUACU-----UGAgCGC--CGUGGACGg -5'
31911 3' -55.1 NC_006938.1 + 56444 0.66 0.745642
Target:  5'- cGGACG--GAGCUCGUGGaGCUUGaCCu -3'
miRNA:   3'- uUCUGCuaCUUGAGCGCCgUGGAC-GG- -5'
31911 3' -55.1 NC_006938.1 + 62982 0.66 0.745642
Target:  5'- cAGGCG--GAGcCUCuCGGCACCgGCCu -3'
miRNA:   3'- uUCUGCuaCUU-GAGcGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 14082 0.66 0.755988
Target:  5'- gAAGACGGUGucgUCGaCGGCGgccgacuggauCUUGCCg -3'
miRNA:   3'- -UUCUGCUACuugAGC-GCCGU-----------GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 14315 0.66 0.765192
Target:  5'- -uGGCGAUGAGCgccuucuuggcaaUCGCGGCGCg---- -3'
miRNA:   3'- uuCUGCUACUUG-------------AGCGCCGUGgacgg -5'
31911 3' -55.1 NC_006938.1 + 54089 0.66 0.766207
Target:  5'- -cGGCGAUGGuCUCGCaGUACUUGa- -3'
miRNA:   3'- uuCUGCUACUuGAGCGcCGUGGACgg -5'
31911 3' -55.1 NC_006938.1 + 29329 0.75 0.251342
Target:  5'- -cGAgGAUGAGCaCGCGGUAcuucuCCUGCCa -3'
miRNA:   3'- uuCUgCUACUUGaGCGCCGU-----GGACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.