Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31911 | 3' | -55.1 | NC_006938.1 | + | 23649 | 0.66 | 0.713963 |
Target: 5'- cGGACGGUGg---CGCGGUcuACCUcguGCCg -3' miRNA: 3'- uUCUGCUACuugaGCGCCG--UGGA---CGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 61411 | 0.66 | 0.713963 |
Target: 5'- cAGACcAUGucggCGUGGCACCgGCCc -3' miRNA: 3'- uUCUGcUACuugaGCGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 57119 | 0.66 | 0.713963 |
Target: 5'- uGGucuCGAUGAGCUCGU---GCUUGCCa -3' miRNA: 3'- uUCu--GCUACUUGAGCGccgUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 43200 | 0.66 | 0.745642 |
Target: 5'- -cGGCG-UGucCUCGCGG-ACCgGCCa -3' miRNA: 3'- uuCUGCuACuuGAGCGCCgUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 54397 | 0.66 | 0.745642 |
Target: 5'- -cGGCGGUGGccagaGCUgGCGacGCACUUGCa -3' miRNA: 3'- uuCUGCUACU-----UGAgCGC--CGUGGACGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 56444 | 0.66 | 0.745642 |
Target: 5'- cGGACG--GAGCUCGUGGaGCUUGaCCu -3' miRNA: 3'- uUCUGCuaCUUGAGCGCCgUGGAC-GG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 62982 | 0.66 | 0.745642 |
Target: 5'- cAGGCG--GAGcCUCuCGGCACCgGCCu -3' miRNA: 3'- uUCUGCuaCUU-GAGcGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 58910 | 0.66 | 0.745642 |
Target: 5'- --aACGGUGAGCUugaCGCGGCcaucaCUGCg -3' miRNA: 3'- uucUGCUACUUGA---GCGCCGug---GACGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 14082 | 0.66 | 0.755988 |
Target: 5'- gAAGACGGUGucgUCGaCGGCGgccgacuggauCUUGCCg -3' miRNA: 3'- -UUCUGCUACuugAGC-GCCGU-----------GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 46977 | 0.66 | 0.755988 |
Target: 5'- -cGACGAgUGGGCgCGCGuCACCgugcGCCa -3' miRNA: 3'- uuCUGCU-ACUUGaGCGCcGUGGa---CGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 14315 | 0.66 | 0.765192 |
Target: 5'- -uGGCGAUGAGCgccuucuuggcaaUCGCGGCGCg---- -3' miRNA: 3'- uuCUGCUACUUG-------------AGCGCCGUGgacgg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 18968 | 0.66 | 0.766207 |
Target: 5'- gGAGACGAcggacUGAACUacUGgGGCACCcacaagGCa -3' miRNA: 3'- -UUCUGCU-----ACUUGA--GCgCCGUGGa-----CGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 54089 | 0.66 | 0.766207 |
Target: 5'- -cGGCGAUGGuCUCGCaGUACUUGa- -3' miRNA: 3'- uuCUGCUACUuGAGCGcCGUGGACgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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