Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31911 | 3' | -55.1 | NC_006938.1 | + | 37416 | 0.69 | 0.56122 |
Target: 5'- uAGACGuuGUGGuagACccggCGCGGCccgugGCCUGCCa -3' miRNA: 3'- uUCUGC--UACU---UGa---GCGCCG-----UGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 38871 | 0.69 | 0.55045 |
Target: 5'- cGGGACaGAacGGCUCGaacacCGGCACCUGCUc -3' miRNA: 3'- -UUCUG-CUacUUGAGC-----GCCGUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 26672 | 0.69 | 0.55045 |
Target: 5'- cAGAgCGGUGAGCUCuGUcuGCACCUGaCCu -3' miRNA: 3'- uUCU-GCUACUUGAG-CGc-CGUGGAC-GG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 2933 | 0.7 | 0.518552 |
Target: 5'- aGAGACGAUgGAGCUCGCcGCcCCgaugGCg -3' miRNA: 3'- -UUCUGCUA-CUUGAGCGcCGuGGa---CGg -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 20514 | 0.7 | 0.487413 |
Target: 5'- --aGCGAUGucCUUG-GGCACCUGUCg -3' miRNA: 3'- uucUGCUACuuGAGCgCCGUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 57966 | 0.71 | 0.467151 |
Target: 5'- cAGGACGGgugGGACg-GCGGCucCCUGCUc -3' miRNA: 3'- -UUCUGCUa--CUUGagCGCCGu-GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 685 | 0.72 | 0.399927 |
Target: 5'- cGGGGCGGUGAAgUUCGCuGuGUACCUcGCCa -3' miRNA: 3'- -UUCUGCUACUU-GAGCG-C-CGUGGA-CGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 96 | 0.72 | 0.399927 |
Target: 5'- gGGGACGuucAGCUCGCGaGCGgCCUGCUu -3' miRNA: 3'- -UUCUGCuacUUGAGCGC-CGU-GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 24902 | 0.72 | 0.390837 |
Target: 5'- --cGCGAUGGAgUCaGCGGgauccuCACCUGCCa -3' miRNA: 3'- uucUGCUACUUgAG-CGCC------GUGGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 45093 | 0.73 | 0.347459 |
Target: 5'- cGGGGCGAUGucCUCGUcgcgggacGGCugCUGCUg -3' miRNA: 3'- -UUCUGCUACuuGAGCG--------CCGugGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 29329 | 0.75 | 0.251342 |
Target: 5'- -cGAgGAUGAGCaCGCGGUAcuucuCCUGCCa -3' miRNA: 3'- uuCUgCUACUUGaGCGCCGU-----GGACGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 51939 | 0.79 | 0.151322 |
Target: 5'- -cGGCGGUGGGCUCgGCGGUGCC-GCCc -3' miRNA: 3'- uuCUGCUACUUGAG-CGCCGUGGaCGG- -5' |
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31911 | 3' | -55.1 | NC_006938.1 | + | 63320 | 1.1 | 0.000933 |
Target: 5'- cAAGACGAUGAACUCGCGGCACCUGCCg -3' miRNA: 3'- -UUCUGCUACUUGAGCGCCGUGGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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