Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32003 | 3' | -53.9 | NC_006949.1 | + | 14481 | 0.66 | 0.677754 |
Target: 5'- cGCCAGCGgcGGCUACgcgagcggCAGauaagcguugcUCGGCAGCg -3' miRNA: 3'- -UGGUUGUgaCCGAUG--------GUC-----------AGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 14229 | 0.76 | 0.20243 |
Target: 5'- cACCAACAUaacGGCUACCcauaacAG-CAGCAGCg -3' miRNA: 3'- -UGGUUGUGa--CCGAUGG------UCaGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 14215 | 0.7 | 0.486632 |
Target: 5'- gGCC-GCAgUuGCUGCaagaaauCAGUCAGCAGCa -3' miRNA: 3'- -UGGuUGUgAcCGAUG-------GUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 9217 | 0.68 | 0.575532 |
Target: 5'- aACCGaauGCAUcaucucgauGCaGCCAGUCGGCGGCa -3' miRNA: 3'- -UGGU---UGUGac-------CGaUGGUCAGUCGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 8484 | 0.7 | 0.46669 |
Target: 5'- cGCCGugGugucaccuCUGGCgaugUACCAGUCucgcuGCGGCa -3' miRNA: 3'- -UGGUugU--------GACCG----AUGGUCAGu----CGUCG- -5' |
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32003 | 3' | -53.9 | NC_006949.1 | + | 5147 | 0.68 | 0.586822 |
Target: 5'- gGCCAACGCccuGCU-CCGGagUAGCGGCu -3' miRNA: 3'- -UGGUUGUGac-CGAuGGUCa-GUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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