Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32068 | 5' | -58.8 | NC_007016.1 | + | 594 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130981 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130945 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130909 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130873 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130837 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130801 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130765 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130729 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 522 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 558 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 475 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 378 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 439 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 342 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130704 | 1.07 | 0.001297 |
Target: 5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 414 | 1.07 | 0.001297 |
Target: 5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 130630 | 0.81 | 0.094422 |
Target: 5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3' miRNA: 3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 255 | 0.81 | 0.094422 |
Target: 5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3' miRNA: 3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5' |
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32068 | 5' | -58.8 | NC_007016.1 | + | 497 | 0.8 | 0.107993 |
Target: 5'- nGGCCAGCAAGCAGGCCA-CAAGn-- -3' miRNA: 3'- uCCGGUCGUUCGUCCGGUcGUUCguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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