miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 5' -58.8 NC_007016.1 + 22796 0.78 0.156284
Target:  5'- cGGGCCAgagacGCGAGCAccgcgagcGGCCGGCAGGUGGc -3'
miRNA:   3'- -UCCGGU-----CGUUCGU--------CCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 22337 0.66 0.709354
Target:  5'- cGGGUCAGCA--CGGGC-AGCGAGgGGc -3'
miRNA:   3'- -UCCGGUCGUucGUCCGgUCGUUCgUC- -5'
32068 5' -58.8 NC_007016.1 + 107271 0.66 0.709354
Target:  5'- uGGcGCCAGUucucgcAGCgAGGCCAGCAGucccGCGu -3'
miRNA:   3'- -UC-CGGUCGu-----UCG-UCCGGUCGUU----CGUc -5'
32068 5' -58.8 NC_007016.1 + 130348 0.66 0.688874
Target:  5'- gGGGCCcggGGCGccucGGCgGGGCCGGCcccgGGGCGc -3'
miRNA:   3'- -UCCGG---UCGU----UCG-UCCGGUCG----UUCGUc -5'
32068 5' -58.8 NC_007016.1 + 125588 0.66 0.668198
Target:  5'- cAGGCguGCcgguGCGcGCCAGCugcuGGCAGu -3'
miRNA:   3'- -UCCGguCGuu--CGUcCGGUCGu---UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 39981 0.66 0.668198
Target:  5'- uGGCCA-CGAgguggugggacGCAGGCCAGCGuccgAGCuGa -3'
miRNA:   3'- uCCGGUcGUU-----------CGUCCGGUCGU----UCGuC- -5'
32068 5' -58.8 NC_007016.1 + 116136 0.68 0.574648
Target:  5'- uGGCCgGGCAgaGGCcGGCCGGCcaAAGguGc -3'
miRNA:   3'- uCCGG-UCGU--UCGuCCGGUCG--UUCguC- -5'
32068 5' -58.8 NC_007016.1 + 63131 0.69 0.523788
Target:  5'- cGGCCAGgGAgaaccGguGGCCGcGUGAGCGGc -3'
miRNA:   3'- uCCGGUCgUU-----CguCCGGU-CGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 45159 0.69 0.523788
Target:  5'- uAGGCCGGgAuauGCAGGCggUAGCAcgGGCAc -3'
miRNA:   3'- -UCCGGUCgUu--CGUCCG--GUCGU--UCGUc -5'
32068 5' -58.8 NC_007016.1 + 126222 0.69 0.484377
Target:  5'- uGGCgCAGUAGGUcuGGGCCAuaGGGUAGg -3'
miRNA:   3'- uCCG-GUCGUUCG--UCCGGUcgUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 129885 0.7 0.465208
Target:  5'- gGGGCCccCAGGCGcccGGCCGGC-GGCGGc -3'
miRNA:   3'- -UCCGGucGUUCGU---CCGGUCGuUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 26243 0.71 0.410219
Target:  5'- aAGGCCGGCGugguGGCucGCCGGCuguggGGGCGGc -3'
miRNA:   3'- -UCCGGUCGU----UCGucCGGUCG-----UUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130729 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130765 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130801 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130837 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130873 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130909 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130945 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 91985 0.66 0.709354
Target:  5'- aAGGCCAcCAcGCGGGCCGaaAAGguGc -3'
miRNA:   3'- -UCCGGUcGUuCGUCCGGUcgUUCguC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.