miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 5' -58.8 NC_007016.1 + 255 0.81 0.094422
Target:  5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3'
miRNA:   3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5'
32068 5' -58.8 NC_007016.1 + 317 0.77 0.181052
Target:  5'- nGGCCAGCAAGCAGGCCuacugucccucuaaAGacccucAGCAGc -3'
miRNA:   3'- uCCGGUCGUUCGUCCGG--------------UCgu----UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 342 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 378 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 414 1.07 0.001297
Target:  5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 439 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 475 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 497 0.8 0.107993
Target:  5'- nGGCCAGCAAGCAGGCCA-CAAGn-- -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUcGUUCguc -5'
32068 5' -58.8 NC_007016.1 + 522 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 558 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 594 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 1714 0.73 0.305998
Target:  5'- uGGCCGuagauguuccGC-GGCAGGUUAGCAAGUAGg -3'
miRNA:   3'- uCCGGU----------CGuUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 8596 0.67 0.636979
Target:  5'- gGGGUCGGUAgcuguuccucGGgGGGCUGGCAggaAGCGGu -3'
miRNA:   3'- -UCCGGUCGU----------UCgUCCGGUCGU---UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 10332 0.67 0.65573
Target:  5'- uGGGCCAGCAcgacguuGGCGGGgCCGGgAaagagaucgcucuGGCGc -3'
miRNA:   3'- -UCCGGUCGU-------UCGUCC-GGUCgU-------------UCGUc -5'
32068 5' -58.8 NC_007016.1 + 13267 0.67 0.626553
Target:  5'- uGGCCGcGCGgcucuGGCGGGC-GGCAAGUAc -3'
miRNA:   3'- uCCGGU-CGU-----UCGUCCGgUCGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 20844 0.73 0.320626
Target:  5'- cGGCCgcGGCGAGCAcGGCgAGCu-GCAGu -3'
miRNA:   3'- uCCGG--UCGUUCGU-CCGgUCGuuCGUC- -5'
32068 5' -58.8 NC_007016.1 + 21470 0.68 0.595334
Target:  5'- uGGGCCcGUAAcgcuugccGCGGGCCGcuggaauuGCAAGCAa -3'
miRNA:   3'- -UCCGGuCGUU--------CGUCCGGU--------CGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 22012 0.66 0.677522
Target:  5'- -cGCCAGguGGCuGGCCAcGCcugguuuccgucgAGGCGGa -3'
miRNA:   3'- ucCGGUCguUCGuCCGGU-CG-------------UUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 22337 0.66 0.709354
Target:  5'- cGGGUCAGCA--CGGGC-AGCGAGgGGc -3'
miRNA:   3'- -UCCGGUCGUucGUCCGgUCGUUCgUC- -5'
32068 5' -58.8 NC_007016.1 + 22796 0.78 0.156284
Target:  5'- cGGGCCAgagacGCGAGCAccgcgagcGGCCGGCAGGUGGc -3'
miRNA:   3'- -UCCGGU-----CGUUCGU--------CCGGUCGUUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.