miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32070 5' -58.7 NC_007016.1 + 20251 0.66 0.79449
Target:  5'- cGGGGUCcCGuuuaacauugccAGCUACGCCC--UCCUg -3'
miRNA:   3'- aCCCCAGaGU------------UUGGUGCGGGgcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 116078 0.66 0.79449
Target:  5'- cGGcGGUCaUCAGaacauAUCACcCCCCGcgCCCg -3'
miRNA:   3'- aCC-CCAG-AGUU-----UGGUGcGGGGCa-GGG- -5'
32070 5' -58.7 NC_007016.1 + 123131 0.66 0.790024
Target:  5'- aGGGGUUUCucugaguAGACCgaGCGCCCCcaggagcuggaaCCCa -3'
miRNA:   3'- aCCCCAGAG-------UUUGG--UGCGGGGca----------GGG- -5'
32070 5' -58.7 NC_007016.1 + 17099 0.66 0.785523
Target:  5'- cUGGGccaGUC-CGGACC-CGUCCUG-CCCa -3'
miRNA:   3'- -ACCC---CAGaGUUUGGuGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 130339 0.66 0.785523
Target:  5'- aGGGGggCUgGGGCCcgggGCGCCUCGgcggggccggCCCc -3'
miRNA:   3'- aCCCCa-GAgUUUGG----UGCGGGGCa---------GGG- -5'
32070 5' -58.7 NC_007016.1 + 114667 0.66 0.780078
Target:  5'- -uGGGUauugcgCAAugccaagcucccgcuACCAUGCCgCGUCCCg -3'
miRNA:   3'- acCCCAga----GUU---------------UGGUGCGGgGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 130170 0.66 0.773668
Target:  5'- --cGGUC-CGGccgagcccggcggcGCCGCGCCCCGacgCCCc -3'
miRNA:   3'- accCCAGaGUU--------------UGGUGCGGGGCa--GGG- -5'
32070 5' -58.7 NC_007016.1 + 14891 0.66 0.757856
Target:  5'- gGGGGUUaUCAGGgCGCGacggugauuaaCCCCaUCCCg -3'
miRNA:   3'- aCCCCAG-AGUUUgGUGC-----------GGGGcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 129947 0.67 0.748407
Target:  5'- cGaGGGUCUC---CCGCGCggccCCCGggCCCc -3'
miRNA:   3'- aC-CCCAGAGuuuGGUGCG----GGGCa-GGG- -5'
32070 5' -58.7 NC_007016.1 + 123887 0.67 0.748407
Target:  5'- aGGGccaUCUCAAuagcggugaccACUACGCCgCCGUCgCu -3'
miRNA:   3'- aCCCc--AGAGUU-----------UGGUGCGG-GGCAGgG- -5'
32070 5' -58.7 NC_007016.1 + 72104 0.67 0.738859
Target:  5'- cGGGGagaagucaacgUCUCAcucaucgcguuuAugUACGCCUCG-CCCg -3'
miRNA:   3'- aCCCC-----------AGAGU------------UugGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 50196 0.67 0.729221
Target:  5'- gGGGGUCUCgAAACUgaACuGuCCCCG-CCg -3'
miRNA:   3'- aCCCCAGAG-UUUGG--UG-C-GGGGCaGGg -5'
32070 5' -58.7 NC_007016.1 + 78390 0.67 0.729221
Target:  5'- -cGGGUaaCGcAACCGCGCCCCcuucacucucGUCCUg -3'
miRNA:   3'- acCCCAgaGU-UUGGUGCGGGG----------CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 87857 0.67 0.718526
Target:  5'- gGGGGUCgc---CCugGCuCCCGUaaaagacCCCa -3'
miRNA:   3'- aCCCCAGaguuuGGugCG-GGGCA-------GGG- -5'
32070 5' -58.7 NC_007016.1 + 115589 0.67 0.716572
Target:  5'- cGGGG-CUCGAcggcuguggcACCGCGCCagcgauguuuacggCCGuaaUCCCu -3'
miRNA:   3'- aCCCCaGAGUU----------UGGUGCGG--------------GGC---AGGG- -5'
32070 5' -58.7 NC_007016.1 + 42613 0.67 0.709711
Target:  5'- -uGGGUCgu-AACUACGCCCUGgacauggacCCCg -3'
miRNA:   3'- acCCCAGaguUUGGUGCGGGGCa--------GGG- -5'
32070 5' -58.7 NC_007016.1 + 121335 0.67 0.699855
Target:  5'- cGGGGUgUCAccaggaAACCGCGUCUC--CCCu -3'
miRNA:   3'- aCCCCAgAGU------UUGGUGCGGGGcaGGG- -5'
32070 5' -58.7 NC_007016.1 + 16831 0.67 0.699855
Target:  5'- aGGcGUCUCAGACguCGCCCCacucuuucGUCgCg -3'
miRNA:   3'- aCCcCAGAGUUUGguGCGGGG--------CAGgG- -5'
32070 5' -58.7 NC_007016.1 + 15919 0.67 0.699855
Target:  5'- cGGcGGUCgcuugCAcaacAGCCGCGCCgCCG-CCUu -3'
miRNA:   3'- aCC-CCAGa----GU----UUGGUGCGG-GGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 18880 0.67 0.696888
Target:  5'- cGGGGUCgcgcguuucgCAAACaCACGagguuucccagacaCCCCcUCCCg -3'
miRNA:   3'- aCCCCAGa---------GUUUG-GUGC--------------GGGGcAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.