Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32071 | 5' | -59.2 | NC_007016.1 | + | 10094 | 1.13 | 0.000873 |
Target: 5'- cGGACGCCUCGCCGUAUGCGACGCCCCc -3' miRNA: 3'- -CCUGCGGAGCGGCAUACGCUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 116368 | 0.76 | 0.2546 |
Target: 5'- uGGCGCCgauggGCCGUAUGaCGAC-CCCCg -3' miRNA: 3'- cCUGCGGag---CGGCAUAC-GCUGcGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130355 | 0.74 | 0.356587 |
Target: 5'- gGGGCGCCUCGgcggggccggccCCGgggcGCGACcgaggGCCCCg -3' miRNA: 3'- -CCUGCGGAGC------------GGCaua-CGCUG-----CGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130153 | 0.73 | 0.386597 |
Target: 5'- cGGGCggaggGCCgggaGCCGggggaggccgGCGGCGCCCCg -3' miRNA: 3'- -CCUG-----CGGag--CGGCaua-------CGCUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 16968 | 0.73 | 0.404716 |
Target: 5'- aGACGCCUCGCCGga---GACGCgCa -3' miRNA: 3'- cCUGCGGAGCGGCauacgCUGCGgGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130188 | 0.72 | 0.413127 |
Target: 5'- cGGCGCCgCGCCc----CGACGCCCCc -3' miRNA: 3'- cCUGCGGaGCGGcauacGCUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 106868 | 0.72 | 0.413127 |
Target: 5'- ---gGCCUCGCCGgacUGUGCGACcgGCCUa -3' miRNA: 3'- ccugCGGAGCGGC---AUACGCUG--CGGGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 99724 | 0.72 | 0.421645 |
Target: 5'- cGGAuauCGCaUCGUCGUGUGCG-CGCCUa -3' miRNA: 3'- -CCU---GCGgAGCGGCAUACGCuGCGGGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 52854 | 0.72 | 0.430268 |
Target: 5'- -uGCGCCUCGCCGggAUGCagcaACGUCgCCa -3' miRNA: 3'- ccUGCGGAGCGGCa-UACGc---UGCGG-GG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130033 | 0.72 | 0.438993 |
Target: 5'- cGGGCGCCUgggggccccCGCCGg--GCGcCGCCgCu -3' miRNA: 3'- -CCUGCGGA---------GCGGCauaCGCuGCGGgG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130413 | 0.71 | 0.46576 |
Target: 5'- aGGAcCGCCaUGCCGggcgGCGGcCGCCCg -3' miRNA: 3'- -CCU-GCGGaGCGGCaua-CGCU-GCGGGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 22646 | 0.71 | 0.46576 |
Target: 5'- cGGCGCC--GCCGc--GUGGCGCCCCc -3' miRNA: 3'- cCUGCGGagCGGCauaCGCUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130378 | 0.71 | 0.47487 |
Target: 5'- gGGA-GCCgcgCGCCGcggcuUGUGGgGCCCCg -3' miRNA: 3'- -CCUgCGGa--GCGGCau---ACGCUgCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 76649 | 0.71 | 0.493349 |
Target: 5'- cGAUGCUcgUUGCCGUAUGUG-CGCCguCCg -3' miRNA: 3'- cCUGCGG--AGCGGCAUACGCuGCGG--GG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 121434 | 0.7 | 0.540887 |
Target: 5'- cGGGCGaUgUUGCCGUG-GCGGCGUCUg -3' miRNA: 3'- -CCUGC-GgAGCGGCAUaCGCUGCGGGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 130509 | 0.7 | 0.560341 |
Target: 5'- gGGGCcgGCCcCGCCGa----GGCGCCCCg -3' miRNA: 3'- -CCUG--CGGaGCGGCauacgCUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 9430 | 0.7 | 0.570141 |
Target: 5'- cGGACGCCgUGCUGc--GUGGCGUCCg -3' miRNA: 3'- -CCUGCGGaGCGGCauaCGCUGCGGGg -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 53542 | 0.69 | 0.589861 |
Target: 5'- gGGAUuuauCCUCuCUGUGUGCcaACGCCCCa -3' miRNA: 3'- -CCUGc---GGAGcGGCAUACGc-UGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 13956 | 0.69 | 0.609696 |
Target: 5'- gGGugGUacucgugCGCCGU--GCcACGCCCCg -3' miRNA: 3'- -CCugCGga-----GCGGCAuaCGcUGCGGGG- -5' |
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32071 | 5' | -59.2 | NC_007016.1 | + | 123589 | 0.69 | 0.619641 |
Target: 5'- uGGcCGCCcugaUCGCCcc---CGGCGCCCCg -3' miRNA: 3'- -CCuGCGG----AGCGGcauacGCUGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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