miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32071 5' -59.2 NC_007016.1 + 809 0.67 0.718345
Target:  5'- gGGAgGgCUCGggucCCGUGUccucGUGugGCCCUg -3'
miRNA:   3'- -CCUgCgGAGC----GGCAUA----CGCugCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 7846 0.68 0.656459
Target:  5'- cGGCGCgUCaGCCGgucgccgccacgggGCGucuGCGCCCCg -3'
miRNA:   3'- cCUGCGgAG-CGGCaua-----------CGC---UGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 9430 0.7 0.570141
Target:  5'- cGGACGCCgUGCUGc--GUGGCGUCCg -3'
miRNA:   3'- -CCUGCGGaGCGGCauaCGCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 10094 1.13 0.000873
Target:  5'- cGGACGCCUCGCCGUAUGCGACGCCCCc -3'
miRNA:   3'- -CCUGCGGAGCGGCAUACGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 13607 0.67 0.737511
Target:  5'- gGGACGaCUgGCCGUugGCcGCGCgCCg -3'
miRNA:   3'- -CCUGCgGAgCGGCAuaCGcUGCGgGG- -5'
32071 5' -59.2 NC_007016.1 + 13956 0.69 0.609696
Target:  5'- gGGugGUacucgugCGCCGU--GCcACGCCCCg -3'
miRNA:   3'- -CCugCGga-----GCGGCAuaCGcUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 14291 0.67 0.746968
Target:  5'- uGGAucacCGCgUCGCCGUcgcGCGugGCgcacgggaauCCCg -3'
miRNA:   3'- -CCU----GCGgAGCGGCAua-CGCugCG----------GGG- -5'
32071 5' -59.2 NC_007016.1 + 15169 0.67 0.718345
Target:  5'- aGGGCGauccggcgcacCCUgGCgGcGUGCGACGaCCCg -3'
miRNA:   3'- -CCUGC-----------GGAgCGgCaUACGCUGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 16591 0.68 0.659438
Target:  5'- cGGACGCggCGC-----GCGugGCCCCc -3'
miRNA:   3'- -CCUGCGgaGCGgcauaCGCugCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 16744 0.66 0.774734
Target:  5'- cGGGgGCCacgcgCGCCGcGUccGCGuCGCCgCCg -3'
miRNA:   3'- -CCUgCGGa----GCGGCaUA--CGCuGCGG-GG- -5'
32071 5' -59.2 NC_007016.1 + 16904 0.68 0.669354
Target:  5'- gGGGCGCCUU-CCGa--GCGcGCGCCgCCg -3'
miRNA:   3'- -CCUGCGGAGcGGCauaCGC-UGCGG-GG- -5'
32071 5' -59.2 NC_007016.1 + 16968 0.73 0.404716
Target:  5'- aGACGCCUCGCCGga---GACGCgCa -3'
miRNA:   3'- cCUGCGGAGCGGCauacgCUGCGgGg -5'
32071 5' -59.2 NC_007016.1 + 17385 0.68 0.653478
Target:  5'- uGGugGCCgcCGCCGcgcccugccccgugGUGCGAguaaGCUCCg -3'
miRNA:   3'- -CCugCGGa-GCGGCa-------------UACGCUg---CGGGG- -5'
32071 5' -59.2 NC_007016.1 + 21784 0.67 0.708653
Target:  5'- cGcCGCgCUCGCCGUgcuuggccacggAUGaCGGCGUCCa -3'
miRNA:   3'- cCuGCG-GAGCGGCA------------UAC-GCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 22194 0.68 0.659438
Target:  5'- gGGGCGCguuguCUCGUCGUGgcucGCaaucacCGCCCCg -3'
miRNA:   3'- -CCUGCG-----GAGCGGCAUa---CGcu----GCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 22495 0.66 0.75633
Target:  5'- gGGGCGCCaCGCg----GCGGCGCCg- -3'
miRNA:   3'- -CCUGCGGaGCGgcauaCGCUGCGGgg -5'
32071 5' -59.2 NC_007016.1 + 22646 0.71 0.46576
Target:  5'- cGGCGCC--GCCGc--GUGGCGCCCCc -3'
miRNA:   3'- cCUGCGGagCGGCauaCGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 26309 0.66 0.783759
Target:  5'- --cCGCCUCuGCCccccgcgcggGUGCGugccCGCCCCu -3'
miRNA:   3'- ccuGCGGAG-CGGca--------UACGCu---GCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 30881 0.69 0.629595
Target:  5'- aGGGCgGCCgUGCCGggcggugGUGCG-CGgCCCa -3'
miRNA:   3'- -CCUG-CGGaGCGGCa------UACGCuGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 35580 0.67 0.6989
Target:  5'- aGACGUaCUCGCCGUuggauagcUGCacUGCCCCc -3'
miRNA:   3'- cCUGCG-GAGCGGCAu-------ACGcuGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.