miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32071 5' -59.2 NC_007016.1 + 101686 0.66 0.792655
Target:  5'- cGGACGCUgaUCGCCcaAUuCGACGgCCa -3'
miRNA:   3'- -CCUGCGG--AGCGGcaUAcGCUGCgGGg -5'
32071 5' -59.2 NC_007016.1 + 102313 0.67 0.6989
Target:  5'- cGGACGCaaucaaCUCGCCugccaaUGUcGCGACuCCCCc -3'
miRNA:   3'- -CCUGCG------GAGCGGc-----AUA-CGCUGcGGGG- -5'
32071 5' -59.2 NC_007016.1 + 21784 0.67 0.708653
Target:  5'- cGcCGCgCUCGCCGUgcuuggccacggAUGaCGGCGUCCa -3'
miRNA:   3'- cCuGCG-GAGCGGCA------------UAC-GCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 15169 0.67 0.718345
Target:  5'- aGGGCGauccggcgcacCCUgGCgGcGUGCGACGaCCCg -3'
miRNA:   3'- -CCUGC-----------GGAgCGgCaUACGCUGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 103692 0.67 0.727967
Target:  5'- gGGGCGCCagcagaGCCGU----GACGCuCCCa -3'
miRNA:   3'- -CCUGCGGag----CGGCAuacgCUGCG-GGG- -5'
32071 5' -59.2 NC_007016.1 + 22495 0.66 0.75633
Target:  5'- gGGGCGCCaCGCg----GCGGCGCCg- -3'
miRNA:   3'- -CCUGCGGaGCGgcauaCGCUGCGGgg -5'
32071 5' -59.2 NC_007016.1 + 81587 0.66 0.765588
Target:  5'- --cUGCCa-GCCGcGUGCaaGAUGCCCCu -3'
miRNA:   3'- ccuGCGGagCGGCaUACG--CUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 129894 0.66 0.774734
Target:  5'- aGGCGCC-CgGCCGgcgGCGGCGCggggCCg -3'
miRNA:   3'- cCUGCGGaG-CGGCauaCGCUGCGg---GG- -5'
32071 5' -59.2 NC_007016.1 + 67968 0.66 0.783759
Target:  5'- cGGGCGUUgacugCGggaaacCCGUAUGCG-CGCCgCa -3'
miRNA:   3'- -CCUGCGGa----GC------GGCAUACGCuGCGGgG- -5'
32071 5' -59.2 NC_007016.1 + 35580 0.67 0.6989
Target:  5'- aGACGUaCUCGCCGUuggauagcUGCacUGCCCCc -3'
miRNA:   3'- cCUGCG-GAGCGGCAu-------ACGcuGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 16591 0.68 0.659438
Target:  5'- cGGACGCggCGC-----GCGugGCCCCc -3'
miRNA:   3'- -CCUGCGgaGCGgcauaCGCugCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 22194 0.68 0.659438
Target:  5'- gGGGCGCguuguCUCGUCGUGgcucGCaaucacCGCCCCg -3'
miRNA:   3'- -CCUGCG-----GAGCGGCAUa---CGcu----GCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 130355 0.74 0.356587
Target:  5'- gGGGCGCCUCGgcggggccggccCCGgggcGCGACcgaggGCCCCg -3'
miRNA:   3'- -CCUGCGGAGC------------GGCaua-CGCUG-----CGGGG- -5'
32071 5' -59.2 NC_007016.1 + 130188 0.72 0.413127
Target:  5'- cGGCGCCgCGCCc----CGACGCCCCc -3'
miRNA:   3'- cCUGCGGaGCGGcauacGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 121434 0.7 0.540887
Target:  5'- cGGGCGaUgUUGCCGUG-GCGGCGUCUg -3'
miRNA:   3'- -CCUGC-GgAGCGGCAUaCGCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 53542 0.69 0.589861
Target:  5'- gGGAUuuauCCUCuCUGUGUGCcaACGCCCCa -3'
miRNA:   3'- -CCUGc---GGAGcGGCAUACGc-UGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 13956 0.69 0.609696
Target:  5'- gGGugGUacucgugCGCCGU--GCcACGCCCCg -3'
miRNA:   3'- -CCugCGga-----GCGGCAuaCGcUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 30881 0.69 0.629595
Target:  5'- aGGGCgGCCgUGCCGggcggugGUGCG-CGgCCCa -3'
miRNA:   3'- -CCUG-CGGaGCGGCa------UACGCuGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 17385 0.68 0.653478
Target:  5'- uGGugGCCgcCGCCGcgcccugccccgugGUGCGAguaaGCUCCg -3'
miRNA:   3'- -CCugCGGa-GCGGCa-------------UACGCUg---CGGGG- -5'
32071 5' -59.2 NC_007016.1 + 7846 0.68 0.656459
Target:  5'- cGGCGCgUCaGCCGgucgccgccacgggGCGucuGCGCCCCg -3'
miRNA:   3'- cCUGCGgAG-CGGCaua-----------CGC---UGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.