miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32073 5' -60.6 NC_007016.1 + 53151 0.66 0.713106
Target:  5'- --uCGCugGGGAG-CuuGuCCUCUCCg -3'
miRNA:   3'- accGCGugCCCUUaGggC-GGAGAGGg -5'
32073 5' -60.6 NC_007016.1 + 13346 0.66 0.713106
Target:  5'- gGGgGCagGCGGGAugAUCCCGgUCacgaUCCCg -3'
miRNA:   3'- aCCgCG--UGCCCU--UAGGGC-GGag--AGGG- -5'
32073 5' -60.6 NC_007016.1 + 107146 0.66 0.692573
Target:  5'- aGGU-CGCGGGAuAUCuCCGUCUCgguugacUCCCc -3'
miRNA:   3'- aCCGcGUGCCCU-UAG-GGCGGAG-------AGGG- -5'
32073 5' -60.6 NC_007016.1 + 820 0.66 0.683704
Target:  5'- cGGCGgucCugGGGAgggcucggGUCCCGuguCCUCguguggCCCu -3'
miRNA:   3'- aCCGC---GugCCCU--------UAGGGC---GGAGa-----GGG- -5'
32073 5' -60.6 NC_007016.1 + 108436 0.66 0.683704
Target:  5'- cGGgGCaaACGGGuaggCCaGCCUCUCUa -3'
miRNA:   3'- aCCgCG--UGCCCuua-GGgCGGAGAGGg -5'
32073 5' -60.6 NC_007016.1 + 16436 0.66 0.673812
Target:  5'- gGGC-CACGGGGG-CUaCGCCaaaauccgUCUCCCc -3'
miRNA:   3'- aCCGcGUGCCCUUaGG-GCGG--------AGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 116576 0.66 0.663887
Target:  5'- cGGCGCGgccgguucUGGGAaauGUCCgCGCCagCggCCCu -3'
miRNA:   3'- aCCGCGU--------GCCCU---UAGG-GCGGa-Ga-GGG- -5'
32073 5' -60.6 NC_007016.1 + 84388 0.66 0.653938
Target:  5'- cGG-GCGCGGGAugcUUCaCGCUUUUCCa -3'
miRNA:   3'- aCCgCGUGCCCUu--AGG-GCGGAGAGGg -5'
32073 5' -60.6 NC_007016.1 + 118763 0.67 0.643972
Target:  5'- cGGaCGCACcuGGaAGUCCCGUCa-UCCCg -3'
miRNA:   3'- aCC-GCGUGc-CC-UUAGGGCGGagAGGG- -5'
32073 5' -60.6 NC_007016.1 + 130090 0.67 0.632999
Target:  5'- cGGgGC-CGGGggUCCCgcggggggccgggGCCgCcCCCg -3'
miRNA:   3'- aCCgCGuGCCCuuAGGG-------------CGGaGaGGG- -5'
32073 5' -60.6 NC_007016.1 + 13403 0.67 0.624021
Target:  5'- cGGCGCGCGcGGAGaCgUGCugCUCgCCCa -3'
miRNA:   3'- aCCGCGUGC-CCUUaGgGCG--GAGaGGG- -5'
32073 5' -60.6 NC_007016.1 + 16597 0.67 0.608075
Target:  5'- cGGCGCGCGuGGcc-CCCGgguucgugcuagacuCCUCUCgCCc -3'
miRNA:   3'- aCCGCGUGC-CCuuaGGGC---------------GGAGAG-GG- -5'
32073 5' -60.6 NC_007016.1 + 56559 0.67 0.604094
Target:  5'- aGGCGCAguUGGGAcuUCCCGUacaggaaacUUCCCg -3'
miRNA:   3'- aCCGCGU--GCCCUu-AGGGCGga-------GAGGG- -5'
32073 5' -60.6 NC_007016.1 + 82922 0.67 0.604094
Target:  5'- cGGaCGCACGGGGGaggcuggaCCGCCU-UCCg -3'
miRNA:   3'- aCC-GCGUGCCCUUag------GGCGGAgAGGg -5'
32073 5' -60.6 NC_007016.1 + 70734 0.67 0.60111
Target:  5'- gGGCGCugcGCGGGAccucgggcguacguGUcagaCCCGCgC-CUCCCu -3'
miRNA:   3'- aCCGCG---UGCCCU--------------UA----GGGCG-GaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 130493 0.68 0.584245
Target:  5'- aGGCGCccCGGGc--CCCaGCCcccCUCCCg -3'
miRNA:   3'- aCCGCGu-GCCCuuaGGG-CGGa--GAGGG- -5'
32073 5' -60.6 NC_007016.1 + 130032 0.68 0.564528
Target:  5'- gGGCGcCugGGGGccCCCGCCgggCgCCg -3'
miRNA:   3'- aCCGC-GugCCCUuaGGGCGGagaG-GG- -5'
32073 5' -60.6 NC_007016.1 + 947 0.68 0.554734
Target:  5'- cGGCaGCuaaGGGucgCCUGCCUUcuUCCCa -3'
miRNA:   3'- aCCG-CGug-CCCuuaGGGCGGAG--AGGG- -5'
32073 5' -60.6 NC_007016.1 + 20583 0.68 0.54499
Target:  5'- -cGCGCACGGG--UCCCGCgC-CUUCUu -3'
miRNA:   3'- acCGCGUGCCCuuAGGGCG-GaGAGGG- -5'
32073 5' -60.6 NC_007016.1 + 129908 0.69 0.497211
Target:  5'- cGGCgGCGCGGGGccgcggccgccAUCUugCGCCcggggcgagggUCUCCCg -3'
miRNA:   3'- aCCG-CGUGCCCU-----------UAGG--GCGG-----------AGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.