miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32074 3' -59 NC_007016.1 + 22645 0.66 0.774808
Target:  5'- -gGCGCCgCcGcGUGGCgCCCCCUG-CCUg -3'
miRNA:   3'- agCGCGG-GaC-UAUUG-GGGGGACaGGG- -5'
32074 3' -59 NC_007016.1 + 119003 0.66 0.774808
Target:  5'- cCGCGCCCgccgcGAU-ACCCCau--UCCCa -3'
miRNA:   3'- aGCGCGGGa----CUAuUGGGGggacAGGG- -5'
32074 3' -59 NC_007016.1 + 121212 0.66 0.765555
Target:  5'- -aGCGCgC--GUGGCCCCCgUGUCUa -3'
miRNA:   3'- agCGCGgGacUAUUGGGGGgACAGGg -5'
32074 3' -59 NC_007016.1 + 115634 0.66 0.759948
Target:  5'- cCGCGCCCcaaauugcgggcacaUGGUGgcgccggcGCCCCaCCgagCCCa -3'
miRNA:   3'- aGCGCGGG---------------ACUAU--------UGGGG-GGacaGGG- -5'
32074 3' -59 NC_007016.1 + 104239 0.66 0.746714
Target:  5'- -aGCGCCCaGGUGACggccgCCaCCCUGgCCUu -3'
miRNA:   3'- agCGCGGGaCUAUUG-----GG-GGGACaGGG- -5'
32074 3' -59 NC_007016.1 + 51207 0.67 0.717743
Target:  5'- aCGCGCCCgccggGAgaAACaUCCCCUGaaCCg -3'
miRNA:   3'- aGCGCGGGa----CUa-UUG-GGGGGACagGG- -5'
32074 3' -59 NC_007016.1 + 28915 0.67 0.717743
Target:  5'- gCGCGCCCgac--GCCCCCacgucguuuUUGUUCCc -3'
miRNA:   3'- aGCGCGGGacuauUGGGGG---------GACAGGG- -5'
32074 3' -59 NC_007016.1 + 123056 0.67 0.707933
Target:  5'- cUCGUGguuCCCUGAUGcguucuCCUCCagguggaUGUCCCa -3'
miRNA:   3'- -AGCGC---GGGACUAUu-----GGGGGg------ACAGGG- -5'
32074 3' -59 NC_007016.1 + 55970 0.67 0.688135
Target:  5'- -aGCGCCCUGAaaaauucGGCCagggCCCC-GUUCCa -3'
miRNA:   3'- agCGCGGGACUa------UUGG----GGGGaCAGGG- -5'
32074 3' -59 NC_007016.1 + 101023 0.67 0.678163
Target:  5'- -gGCGCCCUGAUAggcACUUCUCggaaCCCg -3'
miRNA:   3'- agCGCGGGACUAU---UGGGGGGaca-GGG- -5'
32074 3' -59 NC_007016.1 + 60781 0.67 0.678163
Target:  5'- uUCGUGuCCCUGGUAucGCCCCCUagcGUUa- -3'
miRNA:   3'- -AGCGC-GGGACUAU--UGGGGGGa--CAGgg -5'
32074 3' -59 NC_007016.1 + 88430 0.68 0.657115
Target:  5'- gUCGuUGCCCUGGUAucguccuguucaaACCCCgCguuuUCCCg -3'
miRNA:   3'- -AGC-GCGGGACUAU-------------UGGGGgGac--AGGG- -5'
32074 3' -59 NC_007016.1 + 107760 0.68 0.644037
Target:  5'- gCGCGCCCauuccgggGGUuGCCCCCCcaggcaccgagCCCg -3'
miRNA:   3'- aGCGCGGGa-------CUAuUGGGGGGaca--------GGG- -5'
32074 3' -59 NC_007016.1 + 129874 0.69 0.607793
Target:  5'- -gGCGCCCggcGggGGCCCCCaggcgCCCg -3'
miRNA:   3'- agCGCGGGa--CuaUUGGGGGgaca-GGG- -5'
32074 3' -59 NC_007016.1 + 115457 0.69 0.597751
Target:  5'- cCGCGCCCggcucgGuGUGACCuCCCCgcgacCCCg -3'
miRNA:   3'- aGCGCGGGa-----C-UAUUGG-GGGGaca--GGG- -5'
32074 3' -59 NC_007016.1 + 14841 0.69 0.5678
Target:  5'- cCGCGgCCaggGAUAAcuuuauCCUCCCgGUCCCa -3'
miRNA:   3'- aGCGCgGGa--CUAUU------GGGGGGaCAGGG- -5'
32074 3' -59 NC_007016.1 + 91616 0.7 0.527532
Target:  5'- cCGC-CCCUGuucgGUGcccGCCCCCCaaacgcgUGUCCCc -3'
miRNA:   3'- aGCGcGGGAC----UAU---UGGGGGG-------ACAGGG- -5'
32074 3' -59 NC_007016.1 + 38018 0.7 0.518829
Target:  5'- -aGgGCCCUGuucuucuGCCCgCgUGUCCCg -3'
miRNA:   3'- agCgCGGGACuau----UGGGgGgACAGGG- -5'
32074 3' -59 NC_007016.1 + 21070 0.7 0.518829
Target:  5'- cCGCGCCUUG-UGGCCugaCCCCg--CCCa -3'
miRNA:   3'- aGCGCGGGACuAUUGG---GGGGacaGGG- -5'
32074 3' -59 NC_007016.1 + 123588 0.71 0.490254
Target:  5'- -gGcCGCCCUGAUcGCCCCCggcGcCCCg -3'
miRNA:   3'- agC-GCGGGACUAuUGGGGGga-CaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.