miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32077 5' -61.3 NC_007016.1 + 17260 0.66 0.674791
Target:  5'- gGGUgggCAGGaCGGGU--CCGGAcUGGCCc -3'
miRNA:   3'- -CCGa--GUCC-GUCCGguGGCCUaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 130278 0.66 0.674791
Target:  5'- gGGCccggCGGaGCGGGaCC-CgGGggCGGCCc -3'
miRNA:   3'- -CCGa---GUC-CGUCC-GGuGgCCuaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 124928 0.66 0.674791
Target:  5'- cGGCcgAGGUcGGCUGUCuGAUCGGCCa -3'
miRNA:   3'- -CCGagUCCGuCCGGUGGcCUAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 15263 0.66 0.674791
Target:  5'- cGGUUUA--CGGGuUCACCGGggUGGCCa -3'
miRNA:   3'- -CCGAGUccGUCC-GGUGGCCuaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 13259 0.66 0.673804
Target:  5'- cGGCUCuGGCGGGCgGCaaguacaggcguaUGGGUgUGGUUa -3'
miRNA:   3'- -CCGAGuCCGUCCGgUG-------------GCCUA-GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 68055 0.66 0.66392
Target:  5'- uGCgauaugCGGGCcggGGGCCG-CGGAUguugaacCGGCCa -3'
miRNA:   3'- cCGa-----GUCCG---UCCGGUgGCCUA-------GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 76881 0.66 0.655995
Target:  5'- aGGCUCuGGC-GGCCuuuauugaggaagguCUGGcAUgGGCCc -3'
miRNA:   3'- -CCGAGuCCGuCCGGu--------------GGCC-UAgCCGG- -5'
32077 5' -61.3 NC_007016.1 + 72736 0.66 0.655003
Target:  5'- gGGCgggaguugagCGGGUGGGUUGCgGGAagcgUGGCCa -3'
miRNA:   3'- -CCGa---------GUCCGUCCGGUGgCCUa---GCCGG- -5'
32077 5' -61.3 NC_007016.1 + 110025 0.66 0.655003
Target:  5'- gGGUgcaUUAGGCagGGGCC-CUGuGAUUGGUCa -3'
miRNA:   3'- -CCG---AGUCCG--UCCGGuGGC-CUAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 16908 0.66 0.655003
Target:  5'- cGGUUaCAGGUgAGGCCGuuuUCGGAUgacgCGGCa -3'
miRNA:   3'- -CCGA-GUCCG-UCCGGU---GGCCUA----GCCGg -5'
32077 5' -61.3 NC_007016.1 + 130037 0.66 0.635146
Target:  5'- cGGC-CGGGCgccuggGGGCCcccGCCGGG-CGccGCCg -3'
miRNA:   3'- -CCGaGUCCG------UCCGG---UGGCCUaGC--CGG- -5'
32077 5' -61.3 NC_007016.1 + 14769 0.66 0.635146
Target:  5'- uGGCcaaaauUCAGGcCAGGCgCGuccuaaCGGA-CGGCCa -3'
miRNA:   3'- -CCG------AGUCC-GUCCG-GUg-----GCCUaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 116136 0.66 0.635146
Target:  5'- uGGC-CGGGCAGag-GCCGGc-CGGCCa -3'
miRNA:   3'- -CCGaGUCCGUCcggUGGCCuaGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 115813 0.66 0.625211
Target:  5'- gGGCUC-GGUGGGgCGCCGGc---GCCa -3'
miRNA:   3'- -CCGAGuCCGUCCgGUGGCCuagcCGG- -5'
32077 5' -61.3 NC_007016.1 + 5256 0.67 0.61528
Target:  5'- aGGCgUCAauacucGGCAacaGGCCAuCUGGAUCuGGCg -3'
miRNA:   3'- -CCG-AGU------CCGU---CCGGU-GGCCUAG-CCGg -5'
32077 5' -61.3 NC_007016.1 + 130403 0.67 0.595462
Target:  5'- uGC-CGGGCGgcGGCCGCCcGGcAUCGggaGCCg -3'
miRNA:   3'- cCGaGUCCGU--CCGGUGG-CC-UAGC---CGG- -5'
32077 5' -61.3 NC_007016.1 + 37781 0.67 0.592497
Target:  5'- uGGC-CAGGCAGcaaaaaauuGCCAguugaguuuugaaaUCGGAaUUGGCCg -3'
miRNA:   3'- -CCGaGUCCGUC---------CGGU--------------GGCCU-AGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 115534 0.67 0.592497
Target:  5'- aGC-CGGGggauuaaGGGCCGCCGGcagggacguuucccAUUGGCCc -3'
miRNA:   3'- cCGaGUCCg------UCCGGUGGCC--------------UAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 71308 0.67 0.585588
Target:  5'- aGGC-CAaaaucGC-GGCCGCCGuuUCGGCCu -3'
miRNA:   3'- -CCGaGUc----CGuCCGGUGGCcuAGCCGG- -5'
32077 5' -61.3 NC_007016.1 + 129886 0.67 0.56594
Target:  5'- gGGCcccCAGGCGcccggccggcGGCgGCgCGGGgccgCGGCCg -3'
miRNA:   3'- -CCGa--GUCCGU----------CCGgUG-GCCUa---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.