Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32082 | 5' | -63.3 | NC_007016.1 | + | 23027 | 1.09 | 0.000546 |
Target: 5'- cGCCCAAUCGGCGCCGCCGGUCCGCCAu -3' miRNA: 3'- -CGGGUUAGCCGCGGCGGCCAGGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130335 | 0.76 | 0.147142 |
Target: 5'- cGUCgGGgcgCGGCGCCGCCGGgcUCgGCCGg -3' miRNA: 3'- -CGGgUUa--GCCGCGGCGGCC--AGgCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 7835 | 0.74 | 0.183147 |
Target: 5'- cGUCCAAacgaCGGCGCgucaGCCGGUcgCCGCCAc -3' miRNA: 3'- -CGGGUUa---GCCGCGg---CGGCCA--GGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 129897 | 0.74 | 0.192142 |
Target: 5'- cGCCCGGccggCGGCGgCGCgGGgccgcggCCGCCAu -3' miRNA: 3'- -CGGGUUa---GCCGCgGCGgCCa------GGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130026 | 0.73 | 0.216336 |
Target: 5'- gGCCCGGgcccgCGGcCGCCGCCcccGG-CCGCCc -3' miRNA: 3'- -CGGGUUa----GCC-GCGGCGG---CCaGGCGGu -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 129974 | 0.73 | 0.226723 |
Target: 5'- cCCCGAgcggGGCGCCGCCGGccUCCcCCGg -3' miRNA: 3'- cGGGUUag--CCGCGGCGGCC--AGGcGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 117666 | 0.73 | 0.232074 |
Target: 5'- aGCC---UCGGCGCCGCUGcG-CCGCCu -3' miRNA: 3'- -CGGguuAGCCGCGGCGGC-CaGGCGGu -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 63022 | 0.71 | 0.298121 |
Target: 5'- uCCCGuaCGGgGuuGCCGGUaCCGCCc -3' miRNA: 3'- cGGGUuaGCCgCggCGGCCA-GGCGGu -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 22497 | 0.71 | 0.298121 |
Target: 5'- gGCgCCAcgCGGCGgCGCCGGUUCagggGUCAc -3' miRNA: 3'- -CG-GGUuaGCCGCgGCGGCCAGG----CGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130213 | 0.71 | 0.300778 |
Target: 5'- aGCCCGGggccccacaagccgCGGCGCgcggcucccgaUGCCGGgcggCCGCCGc -3' miRNA: 3'- -CGGGUUa-------------GCCGCG-----------GCGGCCa---GGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 16896 | 0.71 | 0.304798 |
Target: 5'- uUCCGAgCGcGCGCCGCCGuUCuCGCCGa -3' miRNA: 3'- cGGGUUaGC-CGCGGCGGCcAG-GCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 116586 | 0.71 | 0.30954 |
Target: 5'- cGCCgCuuggCGGCGCgGCCGGUUcugggaaauguccgCGCCAg -3' miRNA: 3'- -CGG-Guua-GCCGCGgCGGCCAG--------------GCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 76659 | 0.71 | 0.31159 |
Target: 5'- uGCCUgc-CGGCGCCGCCG--CCGCUg -3' miRNA: 3'- -CGGGuuaGCCGCGGCGGCcaGGCGGu -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 13277 | 0.7 | 0.325516 |
Target: 5'- cGCCCccgcCGGCGCCGUUcagCCGCCAc -3' miRNA: 3'- -CGGGuua-GCCGCGGCGGccaGGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 39120 | 0.7 | 0.335536 |
Target: 5'- cGCCgCGAUCGGUGuuuuggcgagggaguCCuGCCcGUCCGCCAc -3' miRNA: 3'- -CGG-GUUAGCCGC---------------GG-CGGcCAGGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 22984 | 0.69 | 0.362326 |
Target: 5'- cGCUCGGUcucucgCGGCGCCaccuGCCGG-CCGCUc -3' miRNA: 3'- -CGGGUUA------GCCGCGG----CGGCCaGGCGGu -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130029 | 0.69 | 0.370026 |
Target: 5'- cGCCUGGg-GGCccCCGCCGGgcgCCGCCGc -3' miRNA: 3'- -CGGGUUagCCGc-GGCGGCCa--GGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 13696 | 0.69 | 0.370026 |
Target: 5'- gGCUCGGuaccUCGGCGCa-CCuGUCCGCCGc -3' miRNA: 3'- -CGGGUU----AGCCGCGgcGGcCAGGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130527 | 0.69 | 0.393791 |
Target: 5'- gGCCCucGGUC-GCGCCccgggGCCGGccCCGCCGa -3' miRNA: 3'- -CGGG--UUAGcCGCGG-----CGGCCa-GGCGGU- -5' |
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32082 | 5' | -63.3 | NC_007016.1 | + | 130156 | 0.69 | 0.410174 |
Target: 5'- uCCCGGga-GCGCC-CCGGUCCgGCCGa -3' miRNA: 3'- cGGGUUagcCGCGGcGGCCAGG-CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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