miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32082 5' -63.3 NC_007016.1 + 7835 0.74 0.183147
Target:  5'- cGUCCAAacgaCGGCGCgucaGCCGGUcgCCGCCAc -3'
miRNA:   3'- -CGGGUUa---GCCGCGg---CGGCCA--GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 13277 0.7 0.325516
Target:  5'- cGCCCccgcCGGCGCCGUUcagCCGCCAc -3'
miRNA:   3'- -CGGGuua-GCCGCGGCGGccaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 13696 0.69 0.370026
Target:  5'- gGCUCGGuaccUCGGCGCa-CCuGUCCGCCGc -3'
miRNA:   3'- -CGGGUU----AGCCGCGgcGGcCAGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 16896 0.71 0.304798
Target:  5'- uUCCGAgCGcGCGCCGCCGuUCuCGCCGa -3'
miRNA:   3'- cGGGUUaGC-CGCGGCGGCcAG-GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 18871 0.67 0.470687
Target:  5'- cGCgCGAUCGGUggccgagaagcuGCCgcaguuuuGCCGGgCCGCCGa -3'
miRNA:   3'- -CGgGUUAGCCG------------CGG--------CGGCCaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 19371 0.67 0.516564
Target:  5'- cGCCCGGaaacgCgGGCGCCGCggccauCGGcUCCGCg- -3'
miRNA:   3'- -CGGGUUa----G-CCGCGGCG------GCC-AGGCGgu -5'
32082 5' -63.3 NC_007016.1 + 19639 0.66 0.52596
Target:  5'- cGCUCAcaAUCgcgGGCgGCgGCCGGUUaaCGCCAg -3'
miRNA:   3'- -CGGGU--UAG---CCG-CGgCGGCCAG--GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 22497 0.71 0.298121
Target:  5'- gGCgCCAcgCGGCGgCGCCGGUUCagggGUCAc -3'
miRNA:   3'- -CG-GGUuaGCCGCgGCGGCCAGG----CGGU- -5'
32082 5' -63.3 NC_007016.1 + 22655 0.68 0.435525
Target:  5'- cCCCugaacCGGCGCCGCCGcGUggCGCCc -3'
miRNA:   3'- cGGGuua--GCCGCGGCGGC-CAg-GCGGu -5'
32082 5' -63.3 NC_007016.1 + 22984 0.69 0.362326
Target:  5'- cGCUCGGUcucucgCGGCGCCaccuGCCGG-CCGCUc -3'
miRNA:   3'- -CGGGUUA------GCCGCGG----CGGCCaGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 23027 1.09 0.000546
Target:  5'- cGCCCAAUCGGCGCCGCCGGUCCGCCAu -3'
miRNA:   3'- -CGGGUUAGCCGCGGCGGCCAGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 23157 0.68 0.418522
Target:  5'- cGCCC-AUUGGCuGCCGCCaGcGUCCaauggacgcGCCGg -3'
miRNA:   3'- -CGGGuUAGCCG-CGGCGG-C-CAGG---------CGGU- -5'
32082 5' -63.3 NC_007016.1 + 26344 0.66 0.5835
Target:  5'- cGCCCAggaAUCGGCaaugucaaaCGCCGuuccuUCCGCCu -3'
miRNA:   3'- -CGGGU---UAGCCGcg-------GCGGCc----AGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 26868 0.67 0.479702
Target:  5'- cGUCCcGUCGuacGCGCCGCCcGUagCGCCAc -3'
miRNA:   3'- -CGGGuUAGC---CGCGGCGGcCAg-GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 30209 0.66 0.5835
Target:  5'- uGCCCucUCGGCGCgGC---UCUGCCu -3'
miRNA:   3'- -CGGGuuAGCCGCGgCGgccAGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 39120 0.7 0.335536
Target:  5'- cGCCgCGAUCGGUGuuuuggcgagggaguCCuGCCcGUCCGCCAc -3'
miRNA:   3'- -CGG-GUUAGCCGC---------------GG-CGGcCAGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 63022 0.71 0.298121
Target:  5'- uCCCGuaCGGgGuuGCCGGUaCCGCCc -3'
miRNA:   3'- cGGGUuaGCCgCggCGGCCA-GGCGGu -5'
32082 5' -63.3 NC_007016.1 + 68363 0.66 0.572829
Target:  5'- gGCCguuucggCAAagGGCGagaGCCGG-CCGCCAu -3'
miRNA:   3'- -CGG-------GUUagCCGCgg-CGGCCaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 71830 0.66 0.53922
Target:  5'- aGCCCugaCGGCGUgcuuauaucugugucUGCCGGUgugCGCCAc -3'
miRNA:   3'- -CGGGuuaGCCGCG---------------GCGGCCAg--GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 76659 0.71 0.31159
Target:  5'- uGCCUgc-CGGCGCCGCCG--CCGCUg -3'
miRNA:   3'- -CGGGuuaGCCGCGGCGGCcaGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.