miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32082 5' -63.3 NC_007016.1 + 7835 0.74 0.183147
Target:  5'- cGUCCAAacgaCGGCGCgucaGCCGGUcgCCGCCAc -3'
miRNA:   3'- -CGGGUUa---GCCGCGg---CGGCCA--GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 30209 0.66 0.5835
Target:  5'- uGCCCucUCGGCGCgGC---UCUGCCu -3'
miRNA:   3'- -CGGGuuAGCCGCGgCGgccAGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 117679 0.66 0.544938
Target:  5'- gGCCCGAU-GGCGuCCGuuGGUaaaaCUGCUu -3'
miRNA:   3'- -CGGGUUAgCCGC-GGCggCCA----GGCGGu -5'
32082 5' -63.3 NC_007016.1 + 19639 0.66 0.52596
Target:  5'- cGCUCAcaAUCgcgGGCgGCgGCCGGUUaaCGCCAg -3'
miRNA:   3'- -CGGGU--UAG---CCG-CGgCGGCCAG--GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130181 0.67 0.516564
Target:  5'- aGCCCGG-CGGCGCCGCgccccgaCGCCc -3'
miRNA:   3'- -CGGGUUaGCCGCGGCGgccag--GCGGu -5'
32082 5' -63.3 NC_007016.1 + 109958 0.67 0.488802
Target:  5'- cGCCCAccCGGa--CGCCGGUCCGg-- -3'
miRNA:   3'- -CGGGUuaGCCgcgGCGGCCAGGCggu -5'
32082 5' -63.3 NC_007016.1 + 130121 0.68 0.435525
Target:  5'- cGCCCccgGGUCccGCuCCGCCGGgccCCGCCGa -3'
miRNA:   3'- -CGGG---UUAGc-CGcGGCGGCCa--GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 124814 0.68 0.435525
Target:  5'- gGCCCcagucuGUCGGCGagggUGCCuGUUCGCCGc -3'
miRNA:   3'- -CGGGu-----UAGCCGCg---GCGGcCAGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 102499 0.68 0.418522
Target:  5'- aGgCCAGcaucUCGGCgGCCGaaCGGcUCCGCCAa -3'
miRNA:   3'- -CgGGUU----AGCCG-CGGCg-GCC-AGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130156 0.69 0.410174
Target:  5'- uCCCGGga-GCGCC-CCGGUCCgGCCGa -3'
miRNA:   3'- cGGGUUagcCGCGGcGGCCAGG-CGGU- -5'
32082 5' -63.3 NC_007016.1 + 129897 0.74 0.192142
Target:  5'- cGCCCGGccggCGGCGgCGCgGGgccgcggCCGCCAu -3'
miRNA:   3'- -CGGGUUa---GCCGCgGCGgCCa------GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130026 0.73 0.216336
Target:  5'- gGCCCGGgcccgCGGcCGCCGCCcccGG-CCGCCc -3'
miRNA:   3'- -CGGGUUa----GCC-GCGGCGG---CCaGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 129974 0.73 0.226723
Target:  5'- cCCCGAgcggGGCGCCGCCGGccUCCcCCGg -3'
miRNA:   3'- cGGGUUag--CCGCGGCGGCC--AGGcGGU- -5'
32082 5' -63.3 NC_007016.1 + 22497 0.71 0.298121
Target:  5'- gGCgCCAcgCGGCGgCGCCGGUUCagggGUCAc -3'
miRNA:   3'- -CG-GGUuaGCCGCgGCGGCCAGG----CGGU- -5'
32082 5' -63.3 NC_007016.1 + 130213 0.71 0.300778
Target:  5'- aGCCCGGggccccacaagccgCGGCGCgcggcucccgaUGCCGGgcggCCGCCGc -3'
miRNA:   3'- -CGGGUUa-------------GCCGCG-----------GCGGCCa---GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 76659 0.71 0.31159
Target:  5'- uGCCUgc-CGGCGCCGCCG--CCGCUg -3'
miRNA:   3'- -CGGGuuaGCCGCGGCGGCcaGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 13277 0.7 0.325516
Target:  5'- cGCCCccgcCGGCGCCGUUcagCCGCCAc -3'
miRNA:   3'- -CGGGuua-GCCGCGGCGGccaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 26344 0.66 0.5835
Target:  5'- cGCCCAggaAUCGGCaaugucaaaCGCCGuuccuUCCGCCu -3'
miRNA:   3'- -CGGGU---UAGCCGcg-------GCGGCc----AGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 130335 0.76 0.147142
Target:  5'- cGUCgGGgcgCGGCGCCGCCGGgcUCgGCCGg -3'
miRNA:   3'- -CGGgUUa--GCCGCGGCGGCC--AGgCGGU- -5'
32082 5' -63.3 NC_007016.1 + 117666 0.73 0.232074
Target:  5'- aGCC---UCGGCGCCGCUGcG-CCGCCu -3'
miRNA:   3'- -CGGguuAGCCGCGGCGGC-CaGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.