miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32085 3' -55.6 NC_007016.1 + 26746 1.09 0.002893
Target:  5'- cUCGCCACCAGAAGCGCAAACGGGACGu -3'
miRNA:   3'- -AGCGGUGGUCUUCGCGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 26710 0.8 0.228143
Target:  5'- gCGCUACgGGcGGCGCGuacGACGGGACGg -3'
miRNA:   3'- aGCGGUGgUCuUCGCGU---UUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 89540 0.8 0.239604
Target:  5'- -gGCCACCAGggGCaGCAAAaacacCGGGGCu -3'
miRNA:   3'- agCGGUGGUCuuCG-CGUUU-----GCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 71152 0.79 0.247909
Target:  5'- -aGaCCACCAGAGGCggaaucacggccaguGCGGACGGGGCGc -3'
miRNA:   3'- agC-GGUGGUCUUCG---------------CGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 130323 0.75 0.442692
Target:  5'- gCGCCGCCGGGcucGGC-CGGAcCGGGGCGc -3'
miRNA:   3'- aGCGGUGGUCU---UCGcGUUU-GCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 104426 0.73 0.509155
Target:  5'- gCGCCuggGCCAGgcGCGCGGcggcAUGGGGCu -3'
miRNA:   3'- aGCGG---UGGUCuuCGCGUU----UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 130328 0.73 0.519003
Target:  5'- gCGCCGCCGGGAGgGgGGcUGGGGCc -3'
miRNA:   3'- aGCGGUGGUCUUCgCgUUuGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 56762 0.73 0.528925
Target:  5'- gUGCCACCAauuGggGCGCuGGCGGGu-- -3'
miRNA:   3'- aGCGGUGGU---CuuCGCGuUUGCCCugc -5'
32085 3' -55.6 NC_007016.1 + 65458 0.73 0.528925
Target:  5'- gCGCCGCCAGGcAGCu---ACGGGACu -3'
miRNA:   3'- aGCGGUGGUCU-UCGcguuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 20422 0.73 0.54897
Target:  5'- gCGCCGCCaAGAAG-GC--GCGGGACc -3'
miRNA:   3'- aGCGGUGG-UCUUCgCGuuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 123406 0.72 0.569246
Target:  5'- aUGCgGCCAucAGCGCccugggGAGCGGGGCGc -3'
miRNA:   3'- aGCGgUGGUcuUCGCG------UUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 42795 0.72 0.589701
Target:  5'- gUGCCACCuGAGGUGCAGGCucuGGAUc -3'
miRNA:   3'- aGCGGUGGuCUUCGCGUUUGc--CCUGc -5'
32085 3' -55.6 NC_007016.1 + 104801 0.72 0.589701
Target:  5'- aUGaCCACCAGAAGCGgCGGACuuGACGa -3'
miRNA:   3'- aGC-GGUGGUCUUCGC-GUUUGccCUGC- -5'
32085 3' -55.6 NC_007016.1 + 106309 0.72 0.610283
Target:  5'- -gGCCACCGGGGcaaCGCu--CGGGGCGg -3'
miRNA:   3'- agCGGUGGUCUUc--GCGuuuGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 130211 0.72 0.610283
Target:  5'- -aGCgGCCcGgcGCGCGGcGCGGGGCGg -3'
miRNA:   3'- agCGgUGGuCuuCGCGUU-UGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 115795 0.71 0.617505
Target:  5'- gCGCCACCAugugcccgcaauuuGggGCGCGgggucaGGCGGGGg- -3'
miRNA:   3'- aGCGGUGGU--------------CuuCGCGU------UUGCCCUgc -5'
32085 3' -55.6 NC_007016.1 + 72475 0.71 0.620602
Target:  5'- uUUGCCGCCAGuccaGAGCGCcccacgauuAGUGGGACGu -3'
miRNA:   3'- -AGCGGUGGUC----UUCGCGu--------UUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 56543 0.71 0.64126
Target:  5'- gUCGUgACCcgucuuGAGGCGCAGuUGGGACu -3'
miRNA:   3'- -AGCGgUGGu-----CUUCGCGUUuGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 130044 0.7 0.682419
Target:  5'- cCGCCGCCGGccGGGCGCcug-GGGGCc -3'
miRNA:   3'- aGCGGUGGUC--UUCGCGuuugCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 115968 0.7 0.682419
Target:  5'- uUUGCCGCCcGggGuCGCcGGCGGGuCa -3'
miRNA:   3'- -AGCGGUGGuCuuC-GCGuUUGCCCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.