miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32085 3' -55.6 NC_007016.1 + 67560 0.68 0.808406
Target:  5'- gUCGUgACUGGAAGUaCuAGCGGGAUGa -3'
miRNA:   3'- -AGCGgUGGUCUUCGcGuUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 13327 0.69 0.732843
Target:  5'- cCGCCuGCCuccGAacgccgGGgGCAGGCGGGAUGa -3'
miRNA:   3'- aGCGG-UGGu--CU------UCgCGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 103528 0.69 0.742699
Target:  5'- aCGCCGCggggCAGAGGcCGCA-ACGuGGAUGg -3'
miRNA:   3'- aGCGGUG----GUCUUC-GCGUuUGC-CCUGC- -5'
32085 3' -55.6 NC_007016.1 + 129925 0.69 0.762106
Target:  5'- -gGCCGCCAucuuGCGCc--CGGGGCGa -3'
miRNA:   3'- agCGGUGGUcuu-CGCGuuuGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 12923 0.69 0.77069
Target:  5'- cUCGCCggcaugcACCAGcuacaacaggaaGAGCGUAGGCGGuuaGACGa -3'
miRNA:   3'- -AGCGG-------UGGUC------------UUCGCGUUUGCC---CUGC- -5'
32085 3' -55.6 NC_007016.1 + 8078 0.69 0.771638
Target:  5'- gUCGaCCGCCuGAuaaAGCGagccGCGGGACa -3'
miRNA:   3'- -AGC-GGUGGuCU---UCGCguu-UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 59915 0.68 0.799436
Target:  5'- aUCGCCGUCAGAaaAGCGCAucaGACcGGAgCGg -3'
miRNA:   3'- -AGCGGUGGUCU--UCGCGU---UUGcCCU-GC- -5'
32085 3' -55.6 NC_007016.1 + 30649 0.68 0.799436
Target:  5'- cCGUCAgaugcgggaUCGGAAGCcUAGAUGGGACGa -3'
miRNA:   3'- aGCGGU---------GGUCUUCGcGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 55102 0.68 0.808406
Target:  5'- aCGCC-CgGGAGGUgGCAcucACGGGACa -3'
miRNA:   3'- aGCGGuGgUCUUCG-CGUu--UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 80284 0.7 0.722898
Target:  5'- cUCGCUAUCGGAccgAGCuGCAGuuacuuuguuccACGGGACc -3'
miRNA:   3'- -AGCGGUGGUCU---UCG-CGUU------------UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 93619 0.7 0.712874
Target:  5'- gCGCCACCucuGGCGCAAACaGGuGCc -3'
miRNA:   3'- aGCGGUGGucuUCGCGUUUGcCC-UGc -5'
32085 3' -55.6 NC_007016.1 + 56543 0.71 0.64126
Target:  5'- gUCGUgACCcgucuuGAGGCGCAGuUGGGACu -3'
miRNA:   3'- -AGCGgUGGu-----CUUCGCGUUuGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 89540 0.8 0.239604
Target:  5'- -gGCCACCAGggGCaGCAAAaacacCGGGGCu -3'
miRNA:   3'- agCGGUGGUCuuCG-CGUUU-----GCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 104426 0.73 0.509155
Target:  5'- gCGCCuggGCCAGgcGCGCGGcggcAUGGGGCu -3'
miRNA:   3'- aGCGG---UGGUCuuCGCGUU----UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 130328 0.73 0.519003
Target:  5'- gCGCCGCCGGGAGgGgGGcUGGGGCc -3'
miRNA:   3'- aGCGGUGGUCUUCgCgUUuGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 56762 0.73 0.528925
Target:  5'- gUGCCACCAauuGggGCGCuGGCGGGu-- -3'
miRNA:   3'- aGCGGUGGU---CuuCGCGuUUGCCCugc -5'
32085 3' -55.6 NC_007016.1 + 20422 0.73 0.54897
Target:  5'- gCGCCGCCaAGAAG-GC--GCGGGACc -3'
miRNA:   3'- aGCGGUGG-UCUUCgCGuuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 123406 0.72 0.569246
Target:  5'- aUGCgGCCAucAGCGCccugggGAGCGGGGCGc -3'
miRNA:   3'- aGCGgUGGUcuUCGCG------UUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 42795 0.72 0.589701
Target:  5'- gUGCCACCuGAGGUGCAGGCucuGGAUc -3'
miRNA:   3'- aGCGGUGGuCUUCGCGUUUGc--CCUGc -5'
32085 3' -55.6 NC_007016.1 + 106309 0.72 0.610283
Target:  5'- -gGCCACCGGGGcaaCGCu--CGGGGCGg -3'
miRNA:   3'- agCGGUGGUCUUc--GCGuuuGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.