miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32085 3' -55.6 NC_007016.1 + 7860 0.66 0.913548
Target:  5'- gUCGCCGCCAcGggGCGUcuGCGccccguGAUa -3'
miRNA:   3'- -AGCGGUGGU-CuuCGCGuuUGCc-----CUGc -5'
32085 3' -55.6 NC_007016.1 + 8078 0.69 0.771638
Target:  5'- gUCGaCCGCCuGAuaaAGCGagccGCGGGACa -3'
miRNA:   3'- -AGC-GGUGGuCU---UCGCguu-UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 11701 0.68 0.814589
Target:  5'- aCGCCACCauuaAGAAGCugucugauacacacGCGgcaAACGGGuCGg -3'
miRNA:   3'- aGCGGUGG----UCUUCG--------------CGU---UUGCCCuGC- -5'
32085 3' -55.6 NC_007016.1 + 12923 0.69 0.77069
Target:  5'- cUCGCCggcaugcACCAGcuacaacaggaaGAGCGUAGGCGGuuaGACGa -3'
miRNA:   3'- -AGCGG-------UGGUC------------UUCGCGUUUGCC---CUGC- -5'
32085 3' -55.6 NC_007016.1 + 13327 0.69 0.732843
Target:  5'- cCGCCuGCCuccGAacgccgGGgGCAGGCGGGAUGa -3'
miRNA:   3'- aGCGG-UGGu--CU------UCgCGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 15092 0.66 0.88015
Target:  5'- aUCGaCCACCAGGAccggcucGuCGUAAAacccCGGGAUGg -3'
miRNA:   3'- -AGC-GGUGGUCUU-------C-GCGUUU----GCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 16113 0.69 0.763064
Target:  5'- cUCGCCagcuucugguacaccGCCAGGuggggcagguugguGGUcuuguaaucGCAGACGGGGCGg -3'
miRNA:   3'- -AGCGG---------------UGGUCU--------------UCG---------CGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 16719 0.68 0.789392
Target:  5'- gUCGCCGCCGGAaucccguGGgGCGAugaGGGccACGc -3'
miRNA:   3'- -AGCGGUGGUCU-------UCgCGUUug-CCC--UGC- -5'
32085 3' -55.6 NC_007016.1 + 17272 0.69 0.752456
Target:  5'- -gGCCGCCGGuguGgGUggGCaGGACGg -3'
miRNA:   3'- agCGGUGGUCuu-CgCGuuUGcCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 20422 0.73 0.54897
Target:  5'- gCGCCGCCaAGAAG-GC--GCGGGACc -3'
miRNA:   3'- aGCGGUGG-UCUUCgCGuuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 22331 0.66 0.913548
Target:  5'- gCGCCcCCAGA--CGC--GCGGGGCc -3'
miRNA:   3'- aGCGGuGGUCUucGCGuuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 26710 0.8 0.228143
Target:  5'- gCGCUACgGGcGGCGCGuacGACGGGACGg -3'
miRNA:   3'- aGCGGUGgUCuUCGCGU---UUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 26746 1.09 0.002893
Target:  5'- cUCGCCACCAGAAGCGCAAACGGGACGu -3'
miRNA:   3'- -AGCGGUGGUCUUCGCGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 30649 0.68 0.799436
Target:  5'- cCGUCAgaugcgggaUCGGAAGCcUAGAUGGGACGa -3'
miRNA:   3'- aGCGGU---------GGUCUUCGcGUUUGCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 38187 0.66 0.907485
Target:  5'- gUGCCgACCAuu-GCGU-AugGGGACGg -3'
miRNA:   3'- aGCGG-UGGUcuuCGCGuUugCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 40892 0.69 0.784768
Target:  5'- cCGCCACCAGggGaucgcuguacagcuuCGUGAACGGcACc -3'
miRNA:   3'- aGCGGUGGUCuuC---------------GCGUUUGCCcUGc -5'
32085 3' -55.6 NC_007016.1 + 42795 0.72 0.589701
Target:  5'- gUGCCACCuGAGGUGCAGGCucuGGAUc -3'
miRNA:   3'- aGCGGUGGuCUUCGCGUUUGc--CCUGc -5'
32085 3' -55.6 NC_007016.1 + 55102 0.68 0.808406
Target:  5'- aCGCC-CgGGAGGUgGCAcucACGGGACa -3'
miRNA:   3'- aGCGGuGgUCUUCG-CGUu--UGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 56543 0.71 0.64126
Target:  5'- gUCGUgACCcgucuuGAGGCGCAGuUGGGACu -3'
miRNA:   3'- -AGCGgUGGu-----CUUCGCGUUuGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 56762 0.73 0.528925
Target:  5'- gUGCCACCAauuGggGCGCuGGCGGGu-- -3'
miRNA:   3'- aGCGGUGGU---CuuCGCGuUUGCCCugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.