miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 93949 0.66 0.725731
Target:  5'- --aGUUGCuCGagauCGCCAUCGCCaagACCGCc -3'
miRNA:   3'- uaaCAGUG-GCg---GCGGUGGCGG---UGGCG- -5'
32567 5' -60.6 NC_007151.1 + 17153 0.66 0.725731
Target:  5'- -cUGUCGUCGUCGUCGUCGUCAUCGUc -3'
miRNA:   3'- uaACAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 117662 0.66 0.716077
Target:  5'- cAUUGgccggUAgaGCCGaaACCGCCGCUGCc -3'
miRNA:   3'- -UAACa----GUggCGGCggUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 134307 0.66 0.706354
Target:  5'- -cUGUCGgCGCCGCCGuaGUCGgCGa -3'
miRNA:   3'- uaACAGUgGCGGCGGUggCGGUgGCg -5'
32567 5' -60.6 NC_007151.1 + 63342 0.66 0.696571
Target:  5'- aAUUGUUaaACCGCCGagACCGCuguuCAUUGCg -3'
miRNA:   3'- -UAACAG--UGGCGGCggUGGCG----GUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 79509 0.66 0.696571
Target:  5'- --cGUCcuCCuCCGCCACCaCCACCa- -3'
miRNA:   3'- uaaCAGu-GGcGGCGGUGGcGGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 1494 0.66 0.686738
Target:  5'- ----aUACCaCCGCCACCuucuuuGCCGCCGa -3'
miRNA:   3'- uaacaGUGGcGGCGGUGG------CGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 51478 0.66 0.666949
Target:  5'- --cGUCACUGUCGUUAUCGUCAUCu- -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 145829 0.66 0.666949
Target:  5'- ---uUUAUCGUgGCCugUGCCAUUGCa -3'
miRNA:   3'- uaacAGUGGCGgCGGugGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 19677 0.67 0.657011
Target:  5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3'
miRNA:   3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 3036 0.67 0.647054
Target:  5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5'
32567 5' -60.6 NC_007151.1 + 49122 0.67 0.617146
Target:  5'- aAUUG--GCCGUCGUCAUCGaCCAUCGUg -3'
miRNA:   3'- -UAACagUGGCGGCGGUGGC-GGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 19465 0.67 0.617146
Target:  5'- ---cUCugCGCCuuGUCGCguaGCCGCCGCu -3'
miRNA:   3'- uaacAGugGCGG--CGGUGg--CGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 90050 0.67 0.617146
Target:  5'- cGUUGUUGUCGUCGUCGUCGUCGCCGUc -3'
miRNA:   3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 127169 0.68 0.597248
Target:  5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3'
miRNA:   3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 41177 0.68 0.587332
Target:  5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3'
miRNA:   3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 62764 0.68 0.5676
Target:  5'- uUUGUCAUCGCCGgCGCUG--AUCGCg -3'
miRNA:   3'- uAACAGUGGCGGCgGUGGCggUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 60219 0.68 0.557796
Target:  5'- --cGUCACCGCUuucguugaGCCACacaugGCCAUCGa -3'
miRNA:   3'- uaaCAGUGGCGG--------CGGUGg----CGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 16395 0.68 0.548039
Target:  5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3'
miRNA:   3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 142068 0.69 0.537371
Target:  5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3'
miRNA:   3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.