Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 32567 | 5' | -60.6 | NC_007151.1 | + | 36135 | 0.76 | 0.199184 |
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Target: 5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3' miRNA: 3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 92813 | 0.79 | 0.134075 |
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Target: 5'- --aGUguCCGCCGCgaucgaucUACCGCCGCCGCu -3' miRNA: 3'- uaaCAguGGCGGCG--------GUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 1455 | 0.84 | 0.055665 |
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Target: 5'- ----cCACCGCCaCCGCCGCCACCGCc -3' miRNA: 3'- uaacaGUGGCGGcGGUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 127171 | 0.84 | 0.055519 |
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Target: 5'- --cGUCACCGUCGUCgacauaauccacaACCGCCACCGCa -3' miRNA: 3'- uaaCAGUGGCGGCGG-------------UGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 1413 | 0.86 | 0.042735 |
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Target: 5'- ----cCACCGCCaccGCCACCGCCACCGCc -3' miRNA: 3'- uaacaGUGGCGG---CGGUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 126383 | 0.91 | 0.01918 |
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Target: 5'- --cGUCGCCGCCGCCGCCGCCGUCGUg -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 26690 | 1.08 | 0.001219 |
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Target: 5'- cAUUGUCACCGCCGCCACCGCCACCGCc -3' miRNA: 3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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