miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 36135 0.76 0.199184
Target:  5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3'
miRNA:   3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 92813 0.79 0.134075
Target:  5'- --aGUguCCGCCGCgaucgaucUACCGCCGCCGCu -3'
miRNA:   3'- uaaCAguGGCGGCG--------GUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 1455 0.84 0.055665
Target:  5'- ----cCACCGCCaCCGCCGCCACCGCc -3'
miRNA:   3'- uaacaGUGGCGGcGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 127171 0.84 0.055519
Target:  5'- --cGUCACCGUCGUCgacauaauccacaACCGCCACCGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGG-------------UGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 1413 0.86 0.042735
Target:  5'- ----cCACCGCCaccGCCACCGCCACCGCc -3'
miRNA:   3'- uaacaGUGGCGG---CGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 126383 0.91 0.01918
Target:  5'- --cGUCGCCGCCGCCGCCGCCGUCGUg -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 26690 1.08 0.001219
Target:  5'- cAUUGUCACCGCCGCCACCGCCACCGCc -3'
miRNA:   3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.