Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 1259 | 0.69 | 0.999222 |
Target: 5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3' miRNA: 3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 2052 | 0.78 | 0.900624 |
Target: 5'- uGcCGUCAUCGGAgacagaGUCGUCAUgGACAg -3' miRNA: 3'- uCaGCAGUAGCUU------UAGUAGUAgCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 3033 | 0.69 | 0.999222 |
Target: 5'- cGUCGUCAUCGc---UGUCAUUGGCc -3' miRNA: 3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 11731 | 0.66 | 0.999986 |
Target: 5'- uGUUGUCGUgGAAuacgauuggGUCGUCGaUGACAu -3' miRNA: 3'- uCAGCAGUAgCUU---------UAGUAGUaGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 12038 | 0.66 | 0.999993 |
Target: 5'- uGUUGUgGUC--AGUCAUCAUCGGg- -3' miRNA: 3'- uCAGCAgUAGcuUUAGUAGUAGCUgu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 12907 | 0.69 | 0.999373 |
Target: 5'- uGUCGUCAUCG------UCGUCGACc -3' miRNA: 3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 14728 | 0.7 | 0.99904 |
Target: 5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3' miRNA: 3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 17152 | 0.85 | 0.589469 |
Target: 5'- uGUCGUCGUCGucGUCGUCAUCGuCGu -3' miRNA: 3'- uCAGCAGUAGCuuUAGUAGUAGCuGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 17512 | 0.68 | 0.999808 |
Target: 5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3' miRNA: 3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 18292 | 0.73 | 0.988269 |
Target: 5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3' miRNA: 3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 18538 | 0.67 | 0.999959 |
Target: 5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3' miRNA: 3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 19879 | 0.68 | 0.999686 |
Target: 5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3' miRNA: 3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 22057 | 0.78 | 0.893659 |
Target: 5'- gAGUCGUCGUCGguGUCGacgcCAUUGACGc -3' miRNA: 3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 24715 | 0.77 | 0.907323 |
Target: 5'- cGUUaUCGUCGGAAUUAUCGUUGGCGa -3' miRNA: 3'- uCAGcAGUAGCUUUAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 26064 | 0.71 | 0.99749 |
Target: 5'- --aCGUCAUCGAcAUCGUCga-GACAg -3' miRNA: 3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 27359 | 0.74 | 0.972922 |
Target: 5'- -cUC-UCAUCaAAAUCGUCAUCGACAa -3' miRNA: 3'- ucAGcAGUAGcUUUAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 27569 | 1.1 | 0.026944 |
Target: 5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3' miRNA: 3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 27727 | 0.7 | 0.997906 |
Target: 5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3' miRNA: 3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 28892 | 0.66 | 0.999993 |
Target: 5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3' miRNA: 3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 29715 | 0.71 | 0.995813 |
Target: 5'- cGUCGUCGUCGA---CGUCAUCucCAu -3' miRNA: 3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home