miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 1259 0.69 0.999222
Target:  5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3'
miRNA:   3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 2052 0.78 0.900624
Target:  5'- uGcCGUCAUCGGAgacagaGUCGUCAUgGACAg -3'
miRNA:   3'- uCaGCAGUAGCUU------UAGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 3033 0.69 0.999222
Target:  5'- cGUCGUCAUCGc---UGUCAUUGGCc -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 11731 0.66 0.999986
Target:  5'- uGUUGUCGUgGAAuacgauuggGUCGUCGaUGACAu -3'
miRNA:   3'- uCAGCAGUAgCUU---------UAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 12038 0.66 0.999993
Target:  5'- uGUUGUgGUC--AGUCAUCAUCGGg- -3'
miRNA:   3'- uCAGCAgUAGcuUUAGUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 12907 0.69 0.999373
Target:  5'- uGUCGUCAUCG------UCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 14728 0.7 0.99904
Target:  5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3'
miRNA:   3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5'
32568 3' -45.7 NC_007151.1 + 17152 0.85 0.589469
Target:  5'- uGUCGUCGUCGucGUCGUCAUCGuCGu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 17512 0.68 0.999808
Target:  5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3'
miRNA:   3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18292 0.73 0.988269
Target:  5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3'
miRNA:   3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18538 0.67 0.999959
Target:  5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3'
miRNA:   3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 19879 0.68 0.999686
Target:  5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3'
miRNA:   3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 22057 0.78 0.893659
Target:  5'- gAGUCGUCGUCGguGUCGacgcCAUUGACGc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 24715 0.77 0.907323
Target:  5'- cGUUaUCGUCGGAAUUAUCGUUGGCGa -3'
miRNA:   3'- uCAGcAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 26064 0.71 0.99749
Target:  5'- --aCGUCAUCGAcAUCGUCga-GACAg -3'
miRNA:   3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27359 0.74 0.972922
Target:  5'- -cUC-UCAUCaAAAUCGUCAUCGACAa -3'
miRNA:   3'- ucAGcAGUAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27569 1.1 0.026944
Target:  5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3'
miRNA:   3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27727 0.7 0.997906
Target:  5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5'
32568 3' -45.7 NC_007151.1 + 28892 0.66 0.999993
Target:  5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3'
miRNA:   3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 29715 0.71 0.995813
Target:  5'- cGUCGUCGUCGA---CGUCAUCucCAu -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.