miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 132261 0.74 0.980674
Target:  5'- cGUCGUgGUCGucGUCGUCGUCG-Cu -3'
miRNA:   3'- uCAGCAgUAGCuuUAGUAGUAGCuGu -5'
32568 3' -45.7 NC_007151.1 + 80897 0.73 0.982847
Target:  5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3'
miRNA:   3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 105771 0.73 0.982847
Target:  5'- cGUCuGUCGUCGAuuuugcGUCGUCGUCGuCGu -3'
miRNA:   3'- uCAG-CAGUAGCUu-----UAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 35546 0.73 0.985573
Target:  5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3'
miRNA:   3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 43076 0.73 0.988269
Target:  5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3'
miRNA:   3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 140343 0.73 0.989744
Target:  5'- -aUCGUCcgagaGUCGA--UCAUCGUCGACu -3'
miRNA:   3'- ucAGCAG-----UAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 85903 0.72 0.992257
Target:  5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3'
miRNA:   3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 29715 0.71 0.995813
Target:  5'- cGUCGUCGUCGA---CGUCAUCucCAu -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5'
32568 3' -45.7 NC_007151.1 + 122902 0.74 0.978301
Target:  5'- uGUCGUCGUUGucGUCGUCAUCcAUAu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGUAGUAGcUGU- -5'
32568 3' -45.7 NC_007151.1 + 36215 0.74 0.978301
Target:  5'- gAGUCGUUAUCGucGUCGcugaCAUUGACAc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 73867 0.74 0.972922
Target:  5'- cGUCGUCAUCuucGUCAUUAUCGuCAu -3'
miRNA:   3'- uCAGCAGUAGcuuUAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 33554 0.82 0.730502
Target:  5'- uGUCGUCAUCGuccGAGUCuUCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGC---UUUAGuAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 48378 0.81 0.775699
Target:  5'- cGUCGUUaaaagcaucgacauuGUCGAAAUCGUCcgCGACAa -3'
miRNA:   3'- uCAGCAG---------------UAGCUUUAGUAGuaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 103121 0.8 0.828989
Target:  5'- uGUCGUCAUCG---UCAUCGUCGAg- -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 140543 0.78 0.871209
Target:  5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3'
miRNA:   3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 22057 0.78 0.893659
Target:  5'- gAGUCGUCGUCGguGUCGacgcCAUUGACGc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 51474 0.76 0.9466
Target:  5'- gAGUCGUCAcugUCGuuAUCGUCAucuUCGAUg -3'
miRNA:   3'- -UCAGCAGU---AGCuuUAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 92881 0.75 0.966638
Target:  5'- cAGUCGgcgcCAUCG---UCGUCGUCGACGu -3'
miRNA:   3'- -UCAGCa---GUAGCuuuAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27359 0.74 0.972922
Target:  5'- -cUC-UCAUCaAAAUCGUCAUCGACAa -3'
miRNA:   3'- ucAGcAGUAGcUUUAGUAGUAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.