miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 86393 0.68 0.999887
Target:  5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3'
miRNA:   3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 118280 0.68 0.999808
Target:  5'- uGUCGUCAUugaCGAGAUCAacugauuuauagUCAUCGuAUg -3'
miRNA:   3'- uCAGCAGUA---GCUUUAGU------------AGUAGC-UGu -5'
32568 3' -45.7 NC_007151.1 + 17512 0.68 0.999808
Target:  5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3'
miRNA:   3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 19879 0.68 0.999686
Target:  5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3'
miRNA:   3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 12907 0.69 0.999373
Target:  5'- uGUCGUCAUCG------UCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 3033 0.69 0.999222
Target:  5'- cGUCGUCAUCGc---UGUCAUUGGCc -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 1259 0.69 0.999222
Target:  5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3'
miRNA:   3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 14728 0.7 0.99904
Target:  5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3'
miRNA:   3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5'
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 123259 0.7 0.998799
Target:  5'- cGUCGacuucaaUCAUCG-AGUCAaUAUCGACAa -3'
miRNA:   3'- uCAGC-------AGUAGCuUUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123285 0.7 0.998262
Target:  5'- -aUCGaCAUCGAGAUUuaCGUCGACGa -3'
miRNA:   3'- ucAGCaGUAGCUUUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44641 0.7 0.998262
Target:  5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3'
miRNA:   3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 59939 0.7 0.997906
Target:  5'- cGGUCGUUAgCGAcuGUUAuuuuUCAUCGACAa -3'
miRNA:   3'- -UCAGCAGUaGCUu-UAGU----AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 31467 0.7 0.997906
Target:  5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3'
miRNA:   3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27727 0.7 0.997906
Target:  5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5'
32568 3' -45.7 NC_007151.1 + 26064 0.71 0.99749
Target:  5'- --aCGUCAUCGAcAUCGUCga-GACAg -3'
miRNA:   3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57232 0.71 0.997008
Target:  5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3'
miRNA:   3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.