Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 18538 | 0.67 | 0.999959 |
Target: 5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3' miRNA: 3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 37554 | 0.67 | 0.999951 |
Target: 5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3' miRNA: 3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 78266 | 0.67 | 0.999935 |
Target: 5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3' miRNA: 3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 89877 | 0.67 | 0.999935 |
Target: 5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3' miRNA: 3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 101541 | 0.67 | 0.999923 |
Target: 5'- uGUCGUCAcCGAcaaugucgacaauaaAAUUGUCAaCGACAg -3' miRNA: 3'- uCAGCAGUaGCU---------------UUAGUAGUaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 86393 | 0.68 | 0.999887 |
Target: 5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3' miRNA: 3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 17512 | 0.68 | 0.999808 |
Target: 5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3' miRNA: 3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 19879 | 0.68 | 0.999686 |
Target: 5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3' miRNA: 3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 123259 | 0.7 | 0.998799 |
Target: 5'- cGUCGacuucaaUCAUCG-AGUCAaUAUCGACAa -3' miRNA: 3'- uCAGC-------AGUAGCuUUAGUaGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44641 | 0.7 | 0.998262 |
Target: 5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3' miRNA: 3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 28892 | 0.66 | 0.999993 |
Target: 5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3' miRNA: 3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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