miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 123109 0.67 0.999951
Target:  5'- cGUCGUCGacguaaaucUCGAuGUCGaUGUCGGCGa -3'
miRNA:   3'- uCAGCAGU---------AGCUuUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123259 0.7 0.998799
Target:  5'- cGUCGacuucaaUCAUCG-AGUCAaUAUCGACAa -3'
miRNA:   3'- uCAGC-------AGUAGCuUUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123285 0.7 0.998262
Target:  5'- -aUCGaCAUCGAGAUUuaCGUCGACGa -3'
miRNA:   3'- ucAGCaGUAGCUUUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 127183 0.87 0.483671
Target:  5'- cGUCGUCGUCGucGUCAccgUCGUCGACAu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 132261 0.74 0.980674
Target:  5'- cGUCGUgGUCGucGUCGUCGUCG-Cu -3'
miRNA:   3'- uCAGCAgUAGCuuUAGUAGUAGCuGu -5'
32568 3' -45.7 NC_007151.1 + 132869 0.66 0.999986
Target:  5'- uGGcCG-CAUCGAuGUCGUCAaguccgaugccuUCGGCGa -3'
miRNA:   3'- -UCaGCaGUAGCUuUAGUAGU------------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 134551 0.66 0.999993
Target:  5'- cGUUGUCAUCGAuAUUaauguauagauaGUUGUCGAUc -3'
miRNA:   3'- uCAGCAGUAGCUuUAG------------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 140343 0.73 0.989744
Target:  5'- -aUCGUCcgagaGUCGA--UCAUCGUCGACu -3'
miRNA:   3'- ucAGCAG-----UAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 140543 0.78 0.871209
Target:  5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3'
miRNA:   3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 140551 0.66 0.999986
Target:  5'- cGUCG-CcgCGGGAcgAUCGUCGGCGu -3'
miRNA:   3'- uCAGCaGuaGCUUUagUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 143082 0.66 0.999977
Target:  5'- gAGUCGUCGggaUCaacgacggacgauuuGGAcUCAUCAUCGAUu -3'
miRNA:   3'- -UCAGCAGU---AG---------------CUUuAGUAGUAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.