Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 59939 | 0.7 | 0.997906 |
Target: 5'- cGGUCGUUAgCGAcuGUUAuuuuUCAUCGACAa -3' miRNA: 3'- -UCAGCAGUaGCUu-UAGU----AGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 73867 | 0.74 | 0.972922 |
Target: 5'- cGUCGUCAUCuucGUCAUUAUCGuCAu -3' miRNA: 3'- uCAGCAGUAGcuuUAGUAGUAGCuGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 74681 | 0.66 | 0.999981 |
Target: 5'- ----aUCAUCGAGAUUacgAUCGUCGAUg -3' miRNA: 3'- ucagcAGUAGCUUUAG---UAGUAGCUGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 78266 | 0.67 | 0.999935 |
Target: 5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3' miRNA: 3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 80897 | 0.73 | 0.982847 |
Target: 5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3' miRNA: 3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 83142 | 0.75 | 0.963138 |
Target: 5'- -aUCGUCGUCGAcgaCAUgAUCGACAg -3' miRNA: 3'- ucAGCAGUAGCUuuaGUAgUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 85903 | 0.72 | 0.992257 |
Target: 5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3' miRNA: 3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 86393 | 0.68 | 0.999887 |
Target: 5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3' miRNA: 3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 89877 | 0.67 | 0.999935 |
Target: 5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3' miRNA: 3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 90006 | 0.66 | 0.999986 |
Target: 5'- uGUUGUCAaCGAuuUCGUCAU-GAUAa -3' miRNA: 3'- uCAGCAGUaGCUuuAGUAGUAgCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 90041 | 0.75 | 0.963138 |
Target: 5'- cGUCGUCGUCGucgcCGUCGUUGAUg -3' miRNA: 3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 90471 | 0.73 | 0.988269 |
Target: 5'- cGGUCaacgcUCGUCGAcgcCAUCGUCGACAa -3' miRNA: 3'- -UCAGc----AGUAGCUuuaGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 92881 | 0.75 | 0.966638 |
Target: 5'- cAGUCGgcgcCAUCG---UCGUCGUCGACGu -3' miRNA: 3'- -UCAGCa---GUAGCuuuAGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 101541 | 0.67 | 0.999923 |
Target: 5'- uGUCGUCAcCGAcaaugucgacaauaaAAUUGUCAaCGACAg -3' miRNA: 3'- uCAGCAGUaGCU---------------UUAGUAGUaGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 103121 | 0.8 | 0.828989 |
Target: 5'- uGUCGUCAUCG---UCAUCGUCGAg- -3' miRNA: 3'- uCAGCAGUAGCuuuAGUAGUAGCUgu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 105771 | 0.73 | 0.982847 |
Target: 5'- cGUCuGUCGUCGAuuuugcGUCGUCGUCGuCGu -3' miRNA: 3'- uCAG-CAGUAGCUu-----UAGUAGUAGCuGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 107666 | 0.66 | 0.999993 |
Target: 5'- cGGUCGUUuuaAUCGcgGcCGUUGUCGGCGa -3' miRNA: 3'- -UCAGCAG---UAGCuuUaGUAGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 109464 | 0.67 | 0.999964 |
Target: 5'- uGUCGUCAgCGAcuauggCGUCGACGa -3' miRNA: 3'- uCAGCAGUaGCUuuaguaGUAGCUGU- -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 118280 | 0.68 | 0.999808 |
Target: 5'- uGUCGUCAUugaCGAGAUCAacugauuuauagUCAUCGuAUg -3' miRNA: 3'- uCAGCAGUA---GCUUUAGU------------AGUAGC-UGu -5' |
|||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 122902 | 0.74 | 0.978301 |
Target: 5'- uGUCGUCGUUGucGUCGUCAUCcAUAu -3' miRNA: 3'- uCAGCAGUAGCuuUAGUAGUAGcUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home