miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 43076 0.73 0.988269
Target:  5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3'
miRNA:   3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 37877 0.66 0.99999
Target:  5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3'
miRNA:   3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5'
32568 3' -45.7 NC_007151.1 + 37554 0.67 0.999951
Target:  5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3'
miRNA:   3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 37156 0.67 0.999906
Target:  5'- -uUUGUCGUCGAcgccaaaagacgaaAAUUuaauGUCAUCGACGa -3'
miRNA:   3'- ucAGCAGUAGCU--------------UUAG----UAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 36215 0.74 0.978301
Target:  5'- gAGUCGUUAUCGucGUCGcugaCAUUGACAc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 35546 0.73 0.985573
Target:  5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3'
miRNA:   3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 33704 0.83 0.666013
Target:  5'- cGUCGUCGUCGuAAUCGUCAUCGcuGCu -3'
miRNA:   3'- uCAGCAGUAGCuUUAGUAGUAGC--UGu -5'
32568 3' -45.7 NC_007151.1 + 33554 0.82 0.730502
Target:  5'- uGUCGUCAUCGuccGAGUCuUCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGC---UUUAGuAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 31467 0.7 0.997906
Target:  5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3'
miRNA:   3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 29715 0.71 0.995813
Target:  5'- cGUCGUCGUCGA---CGUCAUCucCAu -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5'
32568 3' -45.7 NC_007151.1 + 28892 0.66 0.999993
Target:  5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3'
miRNA:   3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27727 0.7 0.997906
Target:  5'- cGUCGUCGUCG---UCGUCGUCuGaACAu -3'
miRNA:   3'- uCAGCAGUAGCuuuAGUAGUAG-C-UGU- -5'
32568 3' -45.7 NC_007151.1 + 27569 1.1 0.026944
Target:  5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3'
miRNA:   3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 27359 0.74 0.972922
Target:  5'- -cUC-UCAUCaAAAUCGUCAUCGACAa -3'
miRNA:   3'- ucAGcAGUAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 26064 0.71 0.99749
Target:  5'- --aCGUCAUCGAcAUCGUCga-GACAg -3'
miRNA:   3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5'
32568 3' -45.7 NC_007151.1 + 24715 0.77 0.907323
Target:  5'- cGUUaUCGUCGGAAUUAUCGUUGGCGa -3'
miRNA:   3'- uCAGcAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 22057 0.78 0.893659
Target:  5'- gAGUCGUCGUCGguGUCGacgcCAUUGACGc -3'
miRNA:   3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 19879 0.68 0.999686
Target:  5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3'
miRNA:   3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.