miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 90041 0.75 0.963138
Target:  5'- cGUCGUCGUCGucgcCGUCGUUGAUg -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 90006 0.66 0.999986
Target:  5'- uGUUGUCAaCGAuuUCGUCAU-GAUAa -3'
miRNA:   3'- uCAGCAGUaGCUuuAGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 89877 0.67 0.999935
Target:  5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3'
miRNA:   3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 86393 0.68 0.999887
Target:  5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3'
miRNA:   3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 85903 0.72 0.992257
Target:  5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3'
miRNA:   3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 83142 0.75 0.963138
Target:  5'- -aUCGUCGUCGAcgaCAUgAUCGACAg -3'
miRNA:   3'- ucAGCAGUAGCUuuaGUAgUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 80897 0.73 0.982847
Target:  5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3'
miRNA:   3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 78266 0.67 0.999935
Target:  5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3'
miRNA:   3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 74681 0.66 0.999981
Target:  5'- ----aUCAUCGAGAUUacgAUCGUCGAUg -3'
miRNA:   3'- ucagcAGUAGCUUUAG---UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 73867 0.74 0.972922
Target:  5'- cGUCGUCAUCuucGUCAUUAUCGuCAu -3'
miRNA:   3'- uCAGCAGUAGcuuUAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 59939 0.7 0.997906
Target:  5'- cGGUCGUUAgCGAcuGUUAuuuuUCAUCGACAa -3'
miRNA:   3'- -UCAGCAGUaGCUu-UAGU----AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 57232 0.71 0.997008
Target:  5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3'
miRNA:   3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 51474 0.76 0.9466
Target:  5'- gAGUCGUCAcugUCGuuAUCGUCAucuUCGAUg -3'
miRNA:   3'- -UCAGCAGU---AGCuuUAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 49115 0.75 0.955388
Target:  5'- cGUCGUCAUCGAc--CAUCGU-GACAa -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 48378 0.81 0.775699
Target:  5'- cGUCGUUaaaagcaucgacauuGUCGAAAUCGUCcgCGACAa -3'
miRNA:   3'- uCAGCAG---------------UAGCUUUAGUAGuaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 47876 0.78 0.871209
Target:  5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3'
miRNA:   3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 44641 0.7 0.998262
Target:  5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3'
miRNA:   3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44504 0.66 0.999981
Target:  5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3'
miRNA:   3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.