miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 123259 0.7 0.998799
Target:  5'- cGUCGacuucaaUCAUCG-AGUCAaUAUCGACAa -3'
miRNA:   3'- uCAGC-------AGUAGCuUUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 14728 0.7 0.99904
Target:  5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3'
miRNA:   3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5'
32568 3' -45.7 NC_007151.1 + 1259 0.69 0.999222
Target:  5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3'
miRNA:   3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 3033 0.69 0.999222
Target:  5'- cGUCGUCAUCGc---UGUCAUUGGCc -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 12907 0.69 0.999373
Target:  5'- uGUCGUCAUCG------UCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 19879 0.68 0.999686
Target:  5'- gAGUCGU--UCGGAAUCGacgacgggcuUUGUCGGCAa -3'
miRNA:   3'- -UCAGCAguAGCUUUAGU----------AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 17512 0.68 0.999808
Target:  5'- -cUCGUCAUUGAcuUUAUUuuuGUCGGCAg -3'
miRNA:   3'- ucAGCAGUAGCUuuAGUAG---UAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 118280 0.68 0.999808
Target:  5'- uGUCGUCAUugaCGAGAUCAacugauuuauagUCAUCGuAUg -3'
miRNA:   3'- uCAGCAGUA---GCUUUAGU------------AGUAGC-UGu -5'
32568 3' -45.7 NC_007151.1 + 86393 0.68 0.999887
Target:  5'- gAGUUGUUuUCGAAAacacgaagCAUCAUCGAg- -3'
miRNA:   3'- -UCAGCAGuAGCUUUa-------GUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 37156 0.67 0.999906
Target:  5'- -uUUGUCGUCGAcgccaaaagacgaaAAUUuaauGUCAUCGACGa -3'
miRNA:   3'- ucAGCAGUAGCU--------------UUAG----UAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 101541 0.67 0.999923
Target:  5'- uGUCGUCAcCGAcaaugucgacaauaaAAUUGUCAaCGACAg -3'
miRNA:   3'- uCAGCAGUaGCU---------------UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 89877 0.67 0.999935
Target:  5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3'
miRNA:   3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 78266 0.67 0.999935
Target:  5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3'
miRNA:   3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37554 0.67 0.999951
Target:  5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3'
miRNA:   3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 123109 0.67 0.999951
Target:  5'- cGUCGUCGacguaaaucUCGAuGUCGaUGUCGGCGa -3'
miRNA:   3'- uCAGCAGU---------AGCUuUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18538 0.67 0.999959
Target:  5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3'
miRNA:   3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 109464 0.67 0.999964
Target:  5'- uGUCGUCAgCGAcuauggCGUCGACGa -3'
miRNA:   3'- uCAGCAGUaGCUuuaguaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 143082 0.66 0.999977
Target:  5'- gAGUCGUCGggaUCaacgacggacgauuuGGAcUCAUCAUCGAUu -3'
miRNA:   3'- -UCAGCAGU---AG---------------CUUuAGUAGUAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.