Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 74681 | 0.66 | 0.999981 |
Target: 5'- ----aUCAUCGAGAUUacgAUCGUCGAUg -3' miRNA: 3'- ucagcAGUAGCUUUAG---UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44504 | 0.66 | 0.999981 |
Target: 5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3' miRNA: 3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 140551 | 0.66 | 0.999986 |
Target: 5'- cGUCG-CcgCGGGAcgAUCGUCGGCGu -3' miRNA: 3'- uCAGCaGuaGCUUUagUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 11731 | 0.66 | 0.999986 |
Target: 5'- uGUUGUCGUgGAAuacgauuggGUCGUCGaUGACAu -3' miRNA: 3'- uCAGCAGUAgCUU---------UAGUAGUaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 90006 | 0.66 | 0.999986 |
Target: 5'- uGUUGUCAaCGAuuUCGUCAU-GAUAa -3' miRNA: 3'- uCAGCAGUaGCUuuAGUAGUAgCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 132869 | 0.66 | 0.999986 |
Target: 5'- uGGcCG-CAUCGAuGUCGUCAaguccgaugccuUCGGCGa -3' miRNA: 3'- -UCaGCaGUAGCUuUAGUAGU------------AGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 37877 | 0.66 | 0.99999 |
Target: 5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3' miRNA: 3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 134551 | 0.66 | 0.999993 |
Target: 5'- cGUUGUCAUCGAuAUUaauguauagauaGUUGUCGAUc -3' miRNA: 3'- uCAGCAGUAGCUuUAG------------UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 107666 | 0.66 | 0.999993 |
Target: 5'- cGGUCGUUuuaAUCGcgGcCGUUGUCGGCGa -3' miRNA: 3'- -UCAGCAG---UAGCuuUaGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 28892 | 0.66 | 0.999993 |
Target: 5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3' miRNA: 3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 12038 | 0.66 | 0.999993 |
Target: 5'- uGUUGUgGUC--AGUCAUCAUCGGg- -3' miRNA: 3'- uCAGCAgUAGcuUUAGUAGUAGCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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