Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 2052 | 0.78 | 0.900624 |
Target: 5'- uGcCGUCAUCGGAgacagaGUCGUCAUgGACAg -3' miRNA: 3'- uCaGCAGUAGCUU------UAGUAGUAgCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 22057 | 0.78 | 0.893659 |
Target: 5'- gAGUCGUCGUCGguGUCGacgcCAUUGACGc -3' miRNA: 3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 140543 | 0.78 | 0.871209 |
Target: 5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3' miRNA: 3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 47876 | 0.78 | 0.871209 |
Target: 5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3' miRNA: 3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 103121 | 0.8 | 0.828989 |
Target: 5'- uGUCGUCAUCG---UCAUCGUCGAg- -3' miRNA: 3'- uCAGCAGUAGCuuuAGUAGUAGCUgu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 48378 | 0.81 | 0.775699 |
Target: 5'- cGUCGUUaaaagcaucgacauuGUCGAAAUCGUCcgCGACAa -3' miRNA: 3'- uCAGCAG---------------UAGCUUUAGUAGuaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 33554 | 0.82 | 0.730502 |
Target: 5'- uGUCGUCAUCGuccGAGUCuUCGUCGACc -3' miRNA: 3'- uCAGCAGUAGC---UUUAGuAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 33704 | 0.83 | 0.666013 |
Target: 5'- cGUCGUCGUCGuAAUCGUCAUCGcuGCu -3' miRNA: 3'- uCAGCAGUAGCuUUAGUAGUAGC--UGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 17152 | 0.85 | 0.589469 |
Target: 5'- uGUCGUCGUCGucGUCGUCAUCGuCGu -3' miRNA: 3'- uCAGCAGUAGCuuUAGUAGUAGCuGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 127183 | 0.87 | 0.483671 |
Target: 5'- cGUCGUCGUCGucGUCAccgUCGUCGACAu -3' miRNA: 3'- uCAGCAGUAGCuuUAGU---AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 27569 | 1.1 | 0.026944 |
Target: 5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3' miRNA: 3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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