Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32575 | 5' | -48.4 | NC_007151.1 | + | 94131 | 0.7 | 0.99066 |
Target: 5'- -cCGGCGGucuUGGCGAUGGCGAucUCGAg -3' miRNA: 3'- cuGCUGCU---GCUGCUGCUGUUuuAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 87811 | 0.69 | 0.992612 |
Target: 5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3' miRNA: 3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 133755 | 0.68 | 0.998037 |
Target: 5'- aGACGGuCGAgaaugggucauCGACGugGACA---UCGAa -3' miRNA: 3'- -CUGCU-GCU-----------GCUGCugCUGUuuuAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 41559 | 0.66 | 0.999512 |
Target: 5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3' miRNA: 3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 123440 | 0.73 | 0.938153 |
Target: 5'- -uCGACGGCGGCuuucuaGACGACA--AUCGAc -3' miRNA: 3'- cuGCUGCUGCUG------CUGCUGUuuUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 45880 | 0.72 | 0.969926 |
Target: 5'- cGCGACGGCucGCGAgUGGCAAAAUCGu -3' miRNA: 3'- cUGCUGCUGc-UGCU-GCUGUUUUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 36383 | 0.69 | 0.994478 |
Target: 5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3' miRNA: 3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 95487 | 0.66 | 0.999609 |
Target: 5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3' miRNA: 3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 3198 | 0.72 | 0.972853 |
Target: 5'- uGACaGCGAUGACGACGucCAGAuuGUUGAg -3' miRNA: 3'- -CUGcUGCUGCUGCUGCu-GUUU--UAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 64690 | 0.66 | 0.999689 |
Target: 5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3' miRNA: 3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 22229 | 0.69 | 0.992921 |
Target: 5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3' miRNA: 3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 77202 | 0.7 | 0.989335 |
Target: 5'- --aGACGAaGACGACGACGAAGa--- -3' miRNA: 3'- cugCUGCUgCUGCUGCUGUUUUagcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 109019 | 0.69 | 0.996132 |
Target: 5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3' miRNA: 3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 48037 | 0.68 | 0.997217 |
Target: 5'- cACGAuCGucccGCGGCGACGcGCGAucGAUCGAu -3' miRNA: 3'- cUGCU-GC----UGCUGCUGC-UGUU--UUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 91976 | 0.67 | 0.999252 |
Target: 5'- aGGCGGCGcucaaGCGGCGGacaauacaGACGcAGGUCGAc -3' miRNA: 3'- -CUGCUGC-----UGCUGCUg-------CUGU-UUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 117866 | 0.66 | 0.999394 |
Target: 5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3' miRNA: 3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 142387 | 0.75 | 0.903814 |
Target: 5'- -gUGACGACGAUaGCGACAAGGaCGAg -3' miRNA: 3'- cuGCUGCUGCUGcUGCUGUUUUaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 51621 | 0.74 | 0.916281 |
Target: 5'- aACGACGACGAaaGCGAagauGAAUCGAu -3' miRNA: 3'- cUGCUGCUGCUgcUGCUgu--UUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 44801 | 0.72 | 0.959808 |
Target: 5'- -uCGACGGCGGCGAUGAagauGUCGc -3' miRNA: 3'- cuGCUGCUGCUGCUGCUguuuUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 58744 | 0.72 | 0.969926 |
Target: 5'- aACGACGGCGGCG-CGA----GUCGAg -3' miRNA: 3'- cUGCUGCUGCUGCuGCUguuuUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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