miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32771 5' -48.1 NC_007346.1 + 307180 0.66 1
Target:  5'- uGGCGGUgGacUUGgcgGCGGCGACGggCu -3'
miRNA:   3'- gCUGCUAgU--AGCaa-UGCUGCUGCuaG- -5'
32771 5' -48.1 NC_007346.1 + 87082 0.66 1
Target:  5'- gCGACG-UCGUUGUcgaGCGACG-CGAa- -3'
miRNA:   3'- -GCUGCuAGUAGCAa--UGCUGCuGCUag -5'
32771 5' -48.1 NC_007346.1 + 238245 0.66 1
Target:  5'- gCGGCGu--GUCGgugacugGCGACGGCGGcUCa -3'
miRNA:   3'- -GCUGCuagUAGCaa-----UGCUGCUGCU-AG- -5'
32771 5' -48.1 NC_007346.1 + 312620 0.66 1
Target:  5'- aGAaaAUCAcUUGU--CGACGACGAUCg -3'
miRNA:   3'- gCUgcUAGU-AGCAauGCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 364650 0.66 1
Target:  5'- -uGCGAacucUCAUUGaUAUGGCGGcCGAUCg -3'
miRNA:   3'- gcUGCU----AGUAGCaAUGCUGCU-GCUAG- -5'
32771 5' -48.1 NC_007346.1 + 207460 0.66 1
Target:  5'- uGGCauaaGUCccauUCGUUGcCGACGACGAUg -3'
miRNA:   3'- gCUGc---UAGu---AGCAAU-GCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 309745 0.66 1
Target:  5'- uGGCGGUgGacUUGgugGCGGCGACGggCu -3'
miRNA:   3'- gCUGCUAgU--AGCaa-UGCUGCUGCuaG- -5'
32771 5' -48.1 NC_007346.1 + 310279 0.66 1
Target:  5'- uGACGGUgGUgGgggcaaugGCGGCGGCGGa- -3'
miRNA:   3'- gCUGCUAgUAgCaa------UGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 360694 0.66 1
Target:  5'- gCGAUGGUCcaagaacuUUGUguuuacuCGGCGGCGGUCc -3'
miRNA:   3'- -GCUGCUAGu-------AGCAau-----GCUGCUGCUAG- -5'
32771 5' -48.1 NC_007346.1 + 188079 0.66 1
Target:  5'- gGGCGG-CggCGUggGCGGCGGCGGa- -3'
miRNA:   3'- gCUGCUaGuaGCAa-UGCUGCUGCUag -5'
32771 5' -48.1 NC_007346.1 + 128329 0.66 0.999999
Target:  5'- uGGCGAUgGUgGcgAUGGCGAUGGUg -3'
miRNA:   3'- gCUGCUAgUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 197637 0.66 0.999999
Target:  5'- uGAUGGUgGUgGcgaugGCGGCGGCGAUg -3'
miRNA:   3'- gCUGCUAgUAgCaa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 198399 0.66 0.999999
Target:  5'- uGAUGGUgGUgGagGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUAgCaaUGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 249009 0.66 0.999999
Target:  5'- uCGACGAUgGUUGcgguaACGGCGGCGuAUUu -3'
miRNA:   3'- -GCUGCUAgUAGCaa---UGCUGCUGC-UAG- -5'
32771 5' -48.1 NC_007346.1 + 238339 0.67 0.999997
Target:  5'- uGGCGGcUCAUC--UGCGAcCGGCGAUg -3'
miRNA:   3'- gCUGCU-AGUAGcaAUGCU-GCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 189927 0.68 0.999992
Target:  5'- gCGGCGGUgAUgGUggcgGUGACGGCGAUg -3'
miRNA:   3'- -GCUGCUAgUAgCAa---UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 238287 0.68 0.999989
Target:  5'- gCGACGGuggcUCAccuUCGaccgGCGACGGCGGcUCa -3'
miRNA:   3'- -GCUGCU----AGU---AGCaa--UGCUGCUGCU-AG- -5'
32771 5' -48.1 NC_007346.1 + 267180 0.68 0.999989
Target:  5'- aGGCGAUCG-CGUUACGucaugcgcuCGA-GAUCg -3'
miRNA:   3'- gCUGCUAGUaGCAAUGCu--------GCUgCUAG- -5'
32771 5' -48.1 NC_007346.1 + 197778 0.68 0.999981
Target:  5'- aGGCGAUgGUggCGgugGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUA--GCaa-UGCUGCUGCUAg -5'
32771 5' -48.1 NC_007346.1 + 197808 0.68 0.999981
Target:  5'- aGGCGAUgGUggCGgugGCGAUGGCGGUg -3'
miRNA:   3'- gCUGCUAgUA--GCaa-UGCUGCUGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.