miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 198000 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 60337 0.72 0.826882
Target:  5'- uGGCGAUGguGGugGUgauggugguGGCGgUGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCA---------CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197898 0.72 0.834655
Target:  5'- aGGCGAUGguGG-CGaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuGC-ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198306 0.71 0.842269
Target:  5'- gGGCGAUGguGGugGgggugaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188942 0.71 0.842269
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307893 0.71 0.849718
Target:  5'- aGGUAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 310267 0.71 0.849718
Target:  5'- gGGCAAUGgCGGcGGCGgauuUGGCGgCGGugGu -3'
miRNA:   3'- -CCGUUAC-GUC-CUGC----ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 310345 0.71 0.849718
Target:  5'- aGGCGAgGguGGugGUgauGGCGgCGGACu -3'
miRNA:   3'- -CCGUUaCguCCugCA---CCGUgGCCUGc -5'
32775 5' -56.7 NC_007346.1 + 198728 0.71 0.849718
Target:  5'- uGGUggUGgGGGugGUGGUGgCGGAg- -3'
miRNA:   3'- -CCGuuACgUCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 308693 0.71 0.849718
Target:  5'- aGGUAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 63438 0.71 0.856997
Target:  5'- uGGCAAUGguGGugGaGGCaaaGCUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCaCCG---UGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 189332 0.71 0.864099
Target:  5'- uGGUGAUGgGGGugGUGGUGauGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307333 0.71 0.871022
Target:  5'- aGGCGGUGguGGAguUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311738 0.71 0.871022
Target:  5'- cGGUAAUgGC-GGugGUGGCGgUGGugGc -3'
miRNA:   3'- -CCGUUA-CGuCCugCACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128314 0.71 0.873739
Target:  5'- uGGCGAUGguGGugGacuuggugguggcgaUGGCGgUGGugGu -3'
miRNA:   3'- -CCGUUACguCCugC---------------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 58047 0.71 0.877759
Target:  5'- aGGUGGaGCGGGugGUGGguUCGGugACGg -3'
miRNA:   3'- -CCGUUaCGUCCugCACCguGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 128068 0.71 0.877759
Target:  5'- uGGUAAUGguGGugGUaauGGCGgaGGACu -3'
miRNA:   3'- -CCGUUACguCCugCA---CCGUggCCUGc -5'
32775 5' -56.7 NC_007346.1 + 197778 0.7 0.884307
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197844 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197694 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.