miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 3' -54.4 NC_007346.1 + 204908 0.66 0.995791
Target:  5'- gGCGcUUGuUUGUUUCGUCGCCACaCAaCAg -3'
miRNA:   3'- -UGC-AAC-AACGAGGUAGCGGUG-GUgGU- -5'
32777 3' -54.4 NC_007346.1 + 307863 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 307330 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 308136 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 37786 0.66 0.995791
Target:  5'- aAUGUUGaUGCUCUuauAUCGUCACUGgCAa -3'
miRNA:   3'- -UGCAACaACGAGG---UAGCGGUGGUgGU- -5'
32777 3' -54.4 NC_007346.1 + 349338 0.66 0.995142
Target:  5'- aAUGUUauccUGCUgCCucaCGCCACCGCCGc -3'
miRNA:   3'- -UGCAAca--ACGA-GGua-GCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 200016 0.66 0.995142
Target:  5'- uUGUUGgcGCgCCAUCGUCuccuCCAUCAc -3'
miRNA:   3'- uGCAACaaCGaGGUAGCGGu---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198520 0.66 0.994413
Target:  5'- --------uCUCCAcCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 180507 0.66 0.994413
Target:  5'- --------uCUCCAUCGCCuCCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGuGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198688 0.66 0.994413
Target:  5'- --------uCUCCAcCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 200466 0.67 0.991685
Target:  5'- -------cGCcaCCGUUGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 58498 0.67 0.989344
Target:  5'- --------cCUUCGUCGCCACCGCCGu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188389 0.67 0.987996
Target:  5'- ----------aCCAUCGCCACCACCGu -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127807 0.67 0.987996
Target:  5'- -------cGCcaccaCCGUCGCCGCCGCCAc -3'
miRNA:   3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 390612 0.67 0.987996
Target:  5'- cGCGUUuaUGCUCgCGUaUGCC-CCACCGg -3'
miRNA:   3'- -UGCAAcaACGAG-GUA-GCGGuGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 205578 0.67 0.986519
Target:  5'- uGCGUauc-GCggaCCGUUGCCGCCAUCAa -3'
miRNA:   3'- -UGCAacaaCGa--GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 142133 0.68 0.984907
Target:  5'- ---aUG-UGCUgCGUCGCUAUCACCGg -3'
miRNA:   3'- ugcaACaACGAgGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188443 0.68 0.984907
Target:  5'- ----------aCCAUCGCCACCGCCAc -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 166006 0.68 0.983151
Target:  5'- ----cGUcGCcaccaucgCCAUCGCCGCCACCu -3'
miRNA:   3'- ugcaaCAaCGa-------GGUAGCGGUGGUGGu -5'
32777 3' -54.4 NC_007346.1 + 270231 0.68 0.983151
Target:  5'- cCGccGUUGCcaCCGUCaccaccaauGCCACCACCAu -3'
miRNA:   3'- uGCaaCAACGa-GGUAG---------CGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.