Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 3' | -54.4 | NC_007346.1 | + | 58498 | 0.67 | 0.989344 |
Target: 5'- --------cCUUCGUCGCCACCGCCGu -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 200466 | 0.67 | 0.991685 |
Target: 5'- -------cGCcaCCGUUGCCACCACCAc -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 180507 | 0.66 | 0.994413 |
Target: 5'- --------uCUCCAUCGCCuCCACCAu -3' miRNA: 3'- ugcaacaacGAGGUAGCGGuGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 198520 | 0.66 | 0.994413 |
Target: 5'- --------uCUCCAcCGCCACCACCAc -3' miRNA: 3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 198688 | 0.66 | 0.994413 |
Target: 5'- --------uCUCCAcCGCCACCACCAc -3' miRNA: 3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 200016 | 0.66 | 0.995142 |
Target: 5'- uUGUUGgcGCgCCAUCGUCuccuCCAUCAc -3' miRNA: 3'- uGCAACaaCGaGGUAGCGGu---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 349338 | 0.66 | 0.995142 |
Target: 5'- aAUGUUauccUGCUgCCucaCGCCACCGCCGc -3' miRNA: 3'- -UGCAAca--ACGA-GGua-GCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 204908 | 0.66 | 0.995791 |
Target: 5'- gGCGcUUGuUUGUUUCGUCGCCACaCAaCAg -3' miRNA: 3'- -UGC-AAC-AACGAGGUAGCGGUG-GUgGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 37786 | 0.66 | 0.995791 |
Target: 5'- aAUGUUGaUGCUCUuauAUCGUCACUGgCAa -3' miRNA: 3'- -UGCAACaACGAGG---UAGCGGUGGUgGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 307330 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 307863 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 308136 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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