miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32790 5' -58.3 NC_007346.1 + 260400 1.1 0.00444
Target:  5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 257960 1.1 0.00444
Target:  5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 257222 1.1 0.00444
Target:  5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 259336 1.01 0.017579
Target:  5'- aUCUCGCGACCCACGCUCGGaCGCGUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 258567 0.87 0.134788
Target:  5'- aUCUCGCGAgCCACGCUCGGaCGCAg- -3'
miRNA:   3'- -AGAGCGCUgGGUGCGAGCCaGCGUag -5'
32790 5' -58.3 NC_007346.1 + 254336 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 255447 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 256368 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 265047 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 253603 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 252832 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 250893 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 249513 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 269417 0.83 0.224547
Target:  5'- aUCUCGCGACCCGuuCaCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUgcGaGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 242998 0.83 0.240133
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCGUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 263080 0.79 0.398123
Target:  5'- aUCUauCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAgcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 260081 0.76 0.51645
Target:  5'- aUCUCuCGAgCCACGCUCGaaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCcaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 246371 0.76 0.534564
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAc- -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUag -5'
32790 5' -58.3 NC_007346.1 + 274979 0.75 0.590075
Target:  5'- cCUCGCGguGCCCAUGCUgcccGUCGCGUCc -3'
miRNA:   3'- aGAGCGC--UGGGUGCGAgc--CAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 260695 0.73 0.693307
Target:  5'- aUCcCGCGAgCCACaCUCGGacgCGCGUCg -3'
miRNA:   3'- -AGaGCGCUgGGUGcGAGCCa--GCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.